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The map label for this gene is ygiD [H]

Identifier: 21244431

GI number: 21244431

Start: 4382534

End: 4383352

Strand: Reverse

Name: ygiD [H]

Synonym: XAC3706

Alternate gene names: 21244431

Gene position: 4383352-4382534 (Counterclockwise)

Preceding gene: 21244432

Following gene: 21244430

Centisome position: 84.69

GC content: 70.45

Gene sequence:

>819_bases
ATGACCCGCTTGCCCTCCCTGTATATCTCGCACGGCTCGCCGATGACTGCGCTGCAGCCGGGGCAGGTCGGCGAGCGCCT
GGCCGACCTGCGGCACGCGTTGCCGCGGCCGCGTGCCATCGTGGTGGCGAGCGCGCACTGGCTGGGCCGTCGCCCGCTGG
TCAGCGGTGCGCTACGGCCGCCGACCATTCACGACTTCGGCGGCTTCCCGGCGCCGTTGTATGCGCTGGACTATCCCGCG
CCTGGCGAGCCGGCATTGGCGCAGCAGATCGTGCGCCGGCTGGAGCAGGCCGGCCTGCATCCGCAGCTGGACCCGCAGCG
CGGCTTCGATCACGGCGTCTGGGTGCCGCTGCGCCTGCTGTATCCGGACGCCGACATCCCGGTGGTATCGCTATCGATCC
AGCCCGAGCTGGGACCGGCGCACCAATTTGCGGTGGGCCGTGCGCTGGCGCCGTTGCGCGATGACGGCGTACTGGTGATC
GGCTCGGGCAGCATCACCCATAACCTGCACGACGTCCGCCACGGCTACAGCGCCGAGCGGCAAGCGCCGTACGTGCGGCC
CTTCATCGAATGGACCGAACGCAAGCTGCTGGACGACGACATCCCCGCGCTGCTGGACTACCGCCGCCAGGCACCGCATG
CCGAACGCGCGCATCCCAGCGACGAGCACTGGCTGCCGCTGTACGTGGCGATGGGCGCGGCTGGCGATGACCGGCTCGGT
GCGCAGCGCATCGACGCCGGCATCGATGCGGGTTTCCTGGCCATGGATCTGTATCGCTTCGACGGCCCTGCAGAGGTGGC
GGACCCGGTCGCGGCATAG

Upstream 100 bases:

>100_bases
TATGGGCGGTGCTGCTGATCGTGCAGGCGTTGCTCGGCGACGGCGCATTCGCGTTGCAGCCATCGCGCTGAGCCTGTTTC
CATCCATCAAGGAGCTGTCC

Downstream 100 bases:

>100_bases
CGCCGGGTGCGGACGTGGGCGCATCGGCATGTTTGGGCCAAGAGCTGCAGTGCCGATGGGGAGAGCGTAGTCGCACGTTC
GCTGGCAGCGGGTTCGCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGRRPLVSGALRPPTIHDFGGFPAPLYALDYPA
PGEPALAQQIVRRLEQAGLHPQLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVI
GSGSITHNLHDVRHGYSAERQAPYVRPFIEWTERKLLDDDIPALLDYRRQAPHAERAHPSDEHWLPLYVAMGAAGDDRLG
AQRIDAGIDAGFLAMDLYRFDGPAEVADPVAA

Sequences:

>Translated_272_residues
MTRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGRRPLVSGALRPPTIHDFGGFPAPLYALDYPA
PGEPALAQQIVRRLEQAGLHPQLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVI
GSGSITHNLHDVRHGYSAERQAPYVRPFIEWTERKLLDDDIPALLDYRRQAPHAERAHPSDEHWLPLYVAMGAAGDDRLG
AQRIDAGIDAGFLAMDLYRFDGPAEVADPVAA
>Mature_271_residues
TRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGRRPLVSGALRPPTIHDFGGFPAPLYALDYPAP
GEPALAQQIVRRLEQAGLHPQLDPQRGFDHGVWVPLRLLYPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVIG
SGSITHNLHDVRHGYSAERQAPYVRPFIEWTERKLLDDDIPALLDYRRQAPHAERAHPSDEHWLPLYVAMGAAGDDRLGA
QRIDAGIDAGFLAMDLYRFDGPAEVADPVAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=259, Percent_Identity=42.0849420849421, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29778; Mature: 29647

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGRRPLVSGALRP
CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCHHCCCCCC
PTIHDFGGFPAPLYALDYPAPGEPALAQQIVRRLEQAGLHPQLDPQRGFDHGVWVPLRLL
CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
YPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVIGSGSITHNLHDVRHGYSAER
CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCHH
QAPYVRPFIEWTERKLLDDDIPALLDYRRQAPHAERAHPSDEHWLPLYVAMGAAGDDRLG
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCHHC
AQRIDAGIDAGFLAMDLYRFDGPAEVADPVAA
HHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCC
>Mature Secondary Structure 
TRLPSLYISHGSPMTALQPGQVGERLADLRHALPRPRAIVVASAHWLGRRPLVSGALRP
CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCHHCCCCCC
PTIHDFGGFPAPLYALDYPAPGEPALAQQIVRRLEQAGLHPQLDPQRGFDHGVWVPLRLL
CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
YPDADIPVVSLSIQPELGPAHQFAVGRALAPLRDDGVLVIGSGSITHNLHDVRHGYSAER
CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCHH
QAPYVRPFIEWTERKLLDDDIPALLDYRRQAPHAERAHPSDEHWLPLYVAMGAAGDDRLG
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCHHC
AQRIDAGIDAGFLAMDLYRFDGPAEVADPVAA
HHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]