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The map label for this gene is pel

Identifier: 21244287

GI number: 21244287

Start: 4226043

End: 4227176

Strand: Reverse

Name: pel

Synonym: XAC3562

Alternate gene names: NA

Gene position: 4227176-4226043 (Counterclockwise)

Preceding gene: 77748728

Following gene: 21244285

Centisome position: 81.68

GC content: 59.52

Gene sequence:

>1134_bases
ATGAAGCCGAAATTTTCGACGGCGGCCGCCGCGTCGCTGTTCGTTGGGTCGTTGCTGCTCACCGGCGTTGCCTATGCCGA
TGCGGCGTTGGAGGTTGCAACCACGGGTTGGGCGACCCAGAACGGCGGCACCAAGGGCGGCTCCAAAGCAGCTGCCGCCA
ATATCTACGTCGTCAAGAACGCCGCCGAGTTGAAAGCAGCATTGAGCGCAAGCGTCGGGAGCAACGGGCGCATCATCAAG
GTCAGCGGCATCATCGATATCAGCGAAGGAAAGCCTTACACCAAAACCTCGGACATGAAGACGCGCGCGCGTCTGGACGT
GCCCACCAAGACCACGCTGATCGGCATCACCAGCAACGCTGAAATTCGCGAAGGCTATTTTTACGTCAAGGCCAACGACG
TCATCATCCGCAATATCACCATCGAAAATCCATGGGACCCGGAGCCGGTCTGGGACCCGGATGATGGCAGCGCCGGCAAC
TGGAATGCGGAGTACGACGGCCTGACCGTGGAAGGCGCCAGCAACGTGTGGGTGGACCATGTCACCTTCACCGATGGCCG
CCGTACCGACGATCAGAATGGCACTGCAAATGGTCGTCCGAAACAGCACCACGATGGCGCGATGGACATCAAGAAAGGCG
CCAATTTCGTCACCGTCTCGTACTCGGCCTTCAAGTCGCACGAAAAGAACAACCTGATCGGCTCCAGCGACAGCGCGTCC
AGTACCGACAGCGGCAAGCTCAAGGTCACCATTCACAACACCCTGTTCGAAAACATTTCTGCGCGCGCCCCGCGCGTGCG
CTTCGGTCAGGTGCACCTGTACAACAACTACCACGTCGGCAGCACCAGCAATGCGGTGTATCCGTTCTCCTACGCGCATG
GCGTGGGCAAGGAGTCGAAGATCTTCTCCGAGCGCAACGTGTTCGAGATCAGCGGTGTCAGCAGCTGCGACAAGATCGCC
GCCGACTACGGTGGCAGCGTGTATCGCGATCAGGGTTCGCTGCTCAACGGCAAGGCGCTGTCGTGCTCGTGGAATACCAA
CATCGGCTGGACACCGCCCTATACCTACAATCTGCTATCGGCAGACAAGGTCGCTGCAGACGTCAAGGCGAAAGCAGGCG
CCGGCAAGCTGTAA

Upstream 100 bases:

>100_bases
GGAATGGAATATTCCATATCTGAATAATACGTTCCGAGTCCGCTGGACCAGGGGTGCGCCGCAGCGCGGCGCATCGAACC
CATTCGAGGGAGAGATCAAG

Downstream 100 bases:

>100_bases
CTGCCGCTGGCTGCAGGGCTGCAAACGCGGTGCAGCACCCAGCTGCACAACGCCCGCAGTGATGCGGGCGTTATGCGTTT
GGCGTGGTGATGGATGTGGT

Product: pectate lyase

Products: NA

Alternate protein names: PL; PSTRU-3 [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYVVKNAAELKAALSASVGSNGRIIK
VSGIIDISEGKPYTKTSDMKTRARLDVPTKTTLIGITSNAEIREGYFYVKANDVIIRNITIENPWDPEPVWDPDDGSAGN
WNAEYDGLTVEGASNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNAVYPFSYAHGVGKESKIFSERNVFEISGVSSCDKIA
ADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNLLSADKVAADVKAKAGAGKL

Sequences:

>Translated_377_residues
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYVVKNAAELKAALSASVGSNGRIIK
VSGIIDISEGKPYTKTSDMKTRARLDVPTKTTLIGITSNAEIREGYFYVKANDVIIRNITIENPWDPEPVWDPDDGSAGN
WNAEYDGLTVEGASNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNAVYPFSYAHGVGKESKIFSERNVFEISGVSSCDKIA
ADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNLLSADKVAADVKAKAGAGKL
>Mature_377_residues
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYVVKNAAELKAALSASVGSNGRIIK
VSGIIDISEGKPYTKTSDMKTRARLDVPTKTTLIGITSNAEIREGYFYVKANDVIIRNITIENPWDPEPVWDPDDGSAGN
WNAEYDGLTVEGASNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNAVYPFSYAHGVGKESKIFSERNVFEISGVSSCDKIA
ADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNLLSADKVAADVKAKAGAGKL

Specific function: Plays a role in bacterial invasion of plants [H]

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002022
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00544 Pec_lyase_C [H]

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 40194; Mature: 40194

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYVVKN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEECCCCCCCCCCCEEEEEEEEEC
AAELKAALSASVGSNGRIIKVSGIIDISEGKPYTKTSDMKTRARLDVPTKTTLIGITSNA
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCC
EIREGYFYVKANDVIIRNITIENPWDPEPVWDPDDGSAGNWNAEYDGLTVEGASNVWVDH
EEECCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEE
VTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEHHHHCCCCCCCCCCCCCCC
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNAVYPFSYAHGVGKESK
CCCCCEEEEEECHHHHHHHHCCCCCEEEEEEEEEECEECCCCCCEEEEEHHHHCCCCCHH
IFSERNVFEISGVSSCDKIAADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNLLS
HHCCCCEEEECCCCCHHHHHHHCCCEEEECCCCEECCEEEEEEECCCCCCCCCCEEEECC
ADKVAADVKAKAGAGKL
HHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYVVKN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEECCCCCCCCCCCEEEEEEEEEC
AAELKAALSASVGSNGRIIKVSGIIDISEGKPYTKTSDMKTRARLDVPTKTTLIGITSNA
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCC
EIREGYFYVKANDVIIRNITIENPWDPEPVWDPDDGSAGNWNAEYDGLTVEGASNVWVDH
EEECCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEE
VTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEHHHHCCCCCCCCCCCCCCC
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNAVYPFSYAHGVGKESK
CCCCCEEEEEECHHHHHHHHCCCCCEEEEEEEEEECEECCCCCCEEEEEHHHHCCCCCHH
IFSERNVFEISGVSSCDKIAADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNLLS
HHCCCCEEEECCCCCHHHHHHHCCCEEEECCCCEECCEEEEEEECCCCCCCCCCEEEECC
ADKVAADVKAKAGAGKL
HHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8589419 [H]