| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is fyuA [C]
Identifier: 21244214
GI number: 21244214
Start: 4123574
End: 4126048
Strand: Direct
Name: fyuA [C]
Synonym: XAC3489
Alternate gene names: 21244214
Gene position: 4123574-4126048 (Clockwise)
Preceding gene: 21244212
Following gene: 21244215
Centisome position: 79.67
GC content: 64.85
Gene sequence:
>2475_bases GTGAGAGAGAGAATCGCAATGTCCACCTTGCACACCATGCGCCTGCACGCCCTGGCCTGCGCGGTCGTGTCCTGCCTGTG CGCGCCCGCTGCGCTGGCCCAGGACACCGCCGCTGCTGCGCCGGCCACGCCGCCGGCTGCCGACAGCGCCGCGGTCAATC TGGATTCGGTGTTCGTCACCGGTACGTCCACCGCCACCACCAAACTCAAATCCAGCGTCTCGGTCAGCACCGTCGGTGCC GAGGCCGTCGAACAATCGGCGCCGCGCAGCACCGCAGAAATCTTCCGCAATATCCCCGGCATCCGCTCCGAATCCAGCGG TGGCGAAGGCAATGCCAACATCGCCGTGCGTGGGTTGCCGGTGGCCTCCGGCGGCGCGAAATTCCTGCAGCTGCAGGAAG ACGGCCTGCCAGTGATGGAGTTCGGCGATATCGCCTTCGGCAACTCGGACATCTTCCTGCGTTCGGATTTCACCCTGGAC CGCATCGAAGCCATCCGCGGCGGTTCGGCGTCGACCTTCACCAGCAACGCGCCCGGCGGCATCATCAACTTCATCAGCAA GACCGGCGACACCGCCGGCGGCAGCGTCGGCGTCAGCCGCGGCCTGGACTACGACAACACCCGCATCGATTTCAATTACG GCGCACCGTTCGCCGAGCAGTGGCAGTTCAACATCGGCGGTTTCTTCCGACAGGGCGATGGCGTGCGCGATGCCGGTTAC ACCACCGACAAGGGTGGCCAACTCAAGGCCAACCTCACCCGCCTGTTCCACAATGGCTATGTGCGCGTGTATGGCAAATA CCTCAACGACCGCGCCGCCGGCTACCTGCCGGTGCCCACCTCGGTGCGCGGCCGCGATGGCTCGCCAGACCTGGGCGGCT TTCCCGGTTTCGATCCCGGCAACGACACCTTGTACAGCCGCAACTTCCGCACCGACGTGGGCCTGGACGGCAACAACCAG CCGCGCCGCACCGATCTGGGCGACGGCATGCACCCCATCTCGCGCACCATCGGTGCCGAGGCCTGGTTCGACTTGGGCAA TGGCTGGAATCTGAGCGAGAAGTTCCGCGTCGCCGACAACAGCGGCCGCTTCGTCAGCCCGTTCCCGGTCGAAGTCACCG ACGCCGCGTCGCTGGCCGCATCCATCGGCGGTGCCGGTGCGCAGCTGGTGCAGGCCAGCGGCCCCGACGCCGGCCAGGCC TATACCGGTAACGCAATCCGCACCCACCTGTTCAACGTGGCCATCAACGACCTGGGCAACGTCACCAACGACCTCAGCGT CTCGCGCGAGTTCGGCGGCGACGGGCGTACGCTGAACCTGCGCATGGGCTATTACAGCTCGCGCCAGACCATCGACATGG ACTGGACCTGGAATTCCTACGTGCAGAGCCTGGGCCGCAATTCGCGCTTGCTCAACGTGGTGGACGCGGCCGGCGTCTCA CGCTCGCAGAACGGCCTGTACGCATACGGCACGCCGTTCTGGGGCGACTGCTGCGTCACCCGCAGCTACGATGTGCGTTA CGACGTCAACGCGCCCTACGTTGCGCTGACCTTCGACAGCGGCAAGTTCAGCATTGATGGCAGCCTGCGCTACGACATGG GCGATGCGCGCGGCAGCTACAACGGCACCGCCATCGCACAGAACCTGGATGTCAACGGCGATGGCGTGATCCAACCGGTG GAACAGCGCGTGGCCACGGTGGACACCGCCAATTCGCGGCCGGTGGACTACGATTGGAATTACCTGTCGTACTCGCTGGG CGGCAACTATCTGATCACCGACGACCTGGGCGCGTTTGCGCGCATCAGCCGCGGCGCACGCGCCAACGCAGACCGGTTGT TGTTCGGCGTCGTGCGCGACGACGGCTCGGTGTCTTCCGAGGAAGGCGTCAATGTGGTGCGCCAGGCCGAAGCCGGCCTG AAGTGGCGCCGCGACGGGCTGAGCCTGTTCGCCACCGCGTTCTCTGCGCGTACCCAGGAGCAGAACTTCGAAATCACCAG CCAGCGCTTCTTCAATCGCAGCTATGAAGCGCACGGCGTGGAACTGGAAGCCAGCTACCGCTATGAAGGGTTTACCCTCA ACGGCGGCCTGACCTGGACCGATGCAGAAATCTCGCGCGATCAGATCACCCCGGAAAATGCCGGCAACGTGCCGCGCCGC CAGGCCGATGTGGTGTGGCAGCTCACGCCCAGCTACCGCGGCGACAACTACCAGTTCGGCGTGAACCTGATCGGCACTAC CGACGCCTATACGCAGGACGCCAATCAGTTGAAGATGCCCGGCTACACGCAGGTGAACCTGTTCGGCGACTACCGCGTCA CCGATGCGCTCACCGTGGCGCTCAACGTCAACAACCTGTTCAACACCTTCGGCCTGACCGAAGCCGAAGAGGCGACCATC CCGGCCAATGGCATCATTCGCGCGCGTTCGATTGCCGGCCGTACCACCAGCATCAGCTTGCGTTACGACTTTTAA
Upstream 100 bases:
>100_bases TTGCAATCGATTGTATTGCGGCGTATTACTGCGCTCGCACTGCAGGCCACATGGCCGCTCCCTGGGAGGGGACGATGCAG GCGTCGGCACACCACCATCT
Downstream 100 bases:
>100_bases GGACCCCGCGCCGGGTCCTGCCCGGCGGCTTCCAATGAGCACCTGCCCGATCGATTCCCCCGCACTGCGCGCGGCTTTTG CCGCGCCGCTGGACCCGCAA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Outer Membrane Receptor Protein; Nb-Dependent Receptor Plug
Number of amino acids: Translated: 824; Mature: 824
Protein sequence:
>824_residues MRERIAMSTLHTMRLHALACAVVSCLCAPAALAQDTAAAAPATPPAADSAAVNLDSVFVTGTSTATTKLKSSVSVSTVGA EAVEQSAPRSTAEIFRNIPGIRSESSGGEGNANIAVRGLPVASGGAKFLQLQEDGLPVMEFGDIAFGNSDIFLRSDFTLD RIEAIRGGSASTFTSNAPGGIINFISKTGDTAGGSVGVSRGLDYDNTRIDFNYGAPFAEQWQFNIGGFFRQGDGVRDAGY TTDKGGQLKANLTRLFHNGYVRVYGKYLNDRAAGYLPVPTSVRGRDGSPDLGGFPGFDPGNDTLYSRNFRTDVGLDGNNQ PRRTDLGDGMHPISRTIGAEAWFDLGNGWNLSEKFRVADNSGRFVSPFPVEVTDAASLAASIGGAGAQLVQASGPDAGQA YTGNAIRTHLFNVAINDLGNVTNDLSVSREFGGDGRTLNLRMGYYSSRQTIDMDWTWNSYVQSLGRNSRLLNVVDAAGVS RSQNGLYAYGTPFWGDCCVTRSYDVRYDVNAPYVALTFDSGKFSIDGSLRYDMGDARGSYNGTAIAQNLDVNGDGVIQPV EQRVATVDTANSRPVDYDWNYLSYSLGGNYLITDDLGAFARISRGARANADRLLFGVVRDDGSVSSEEGVNVVRQAEAGL KWRRDGLSLFATAFSARTQEQNFEITSQRFFNRSYEAHGVELEASYRYEGFTLNGGLTWTDAEISRDQITPENAGNVPRR QADVVWQLTPSYRGDNYQFGVNLIGTTDAYTQDANQLKMPGYTQVNLFGDYRVTDALTVALNVNNLFNTFGLTEAEEATI PANGIIRARSIAGRTTSISLRYDF
Sequences:
>Translated_824_residues MRERIAMSTLHTMRLHALACAVVSCLCAPAALAQDTAAAAPATPPAADSAAVNLDSVFVTGTSTATTKLKSSVSVSTVGA EAVEQSAPRSTAEIFRNIPGIRSESSGGEGNANIAVRGLPVASGGAKFLQLQEDGLPVMEFGDIAFGNSDIFLRSDFTLD RIEAIRGGSASTFTSNAPGGIINFISKTGDTAGGSVGVSRGLDYDNTRIDFNYGAPFAEQWQFNIGGFFRQGDGVRDAGY TTDKGGQLKANLTRLFHNGYVRVYGKYLNDRAAGYLPVPTSVRGRDGSPDLGGFPGFDPGNDTLYSRNFRTDVGLDGNNQ PRRTDLGDGMHPISRTIGAEAWFDLGNGWNLSEKFRVADNSGRFVSPFPVEVTDAASLAASIGGAGAQLVQASGPDAGQA YTGNAIRTHLFNVAINDLGNVTNDLSVSREFGGDGRTLNLRMGYYSSRQTIDMDWTWNSYVQSLGRNSRLLNVVDAAGVS RSQNGLYAYGTPFWGDCCVTRSYDVRYDVNAPYVALTFDSGKFSIDGSLRYDMGDARGSYNGTAIAQNLDVNGDGVIQPV EQRVATVDTANSRPVDYDWNYLSYSLGGNYLITDDLGAFARISRGARANADRLLFGVVRDDGSVSSEEGVNVVRQAEAGL KWRRDGLSLFATAFSARTQEQNFEITSQRFFNRSYEAHGVELEASYRYEGFTLNGGLTWTDAEISRDQITPENAGNVPRR QADVVWQLTPSYRGDNYQFGVNLIGTTDAYTQDANQLKMPGYTQVNLFGDYRVTDALTVALNVNNLFNTFGLTEAEEATI PANGIIRARSIAGRTTSISLRYDF >Mature_824_residues MRERIAMSTLHTMRLHALACAVVSCLCAPAALAQDTAAAAPATPPAADSAAVNLDSVFVTGTSTATTKLKSSVSVSTVGA EAVEQSAPRSTAEIFRNIPGIRSESSGGEGNANIAVRGLPVASGGAKFLQLQEDGLPVMEFGDIAFGNSDIFLRSDFTLD RIEAIRGGSASTFTSNAPGGIINFISKTGDTAGGSVGVSRGLDYDNTRIDFNYGAPFAEQWQFNIGGFFRQGDGVRDAGY TTDKGGQLKANLTRLFHNGYVRVYGKYLNDRAAGYLPVPTSVRGRDGSPDLGGFPGFDPGNDTLYSRNFRTDVGLDGNNQ PRRTDLGDGMHPISRTIGAEAWFDLGNGWNLSEKFRVADNSGRFVSPFPVEVTDAASLAASIGGAGAQLVQASGPDAGQA YTGNAIRTHLFNVAINDLGNVTNDLSVSREFGGDGRTLNLRMGYYSSRQTIDMDWTWNSYVQSLGRNSRLLNVVDAAGVS RSQNGLYAYGTPFWGDCCVTRSYDVRYDVNAPYVALTFDSGKFSIDGSLRYDMGDARGSYNGTAIAQNLDVNGDGVIQPV EQRVATVDTANSRPVDYDWNYLSYSLGGNYLITDDLGAFARISRGARANADRLLFGVVRDDGSVSSEEGVNVVRQAEAGL KWRRDGLSLFATAFSARTQEQNFEITSQRFFNRSYEAHGVELEASYRYEGFTLNGGLTWTDAEISRDQITPENAGNVPRR QADVVWQLTPSYRGDNYQFGVNLIGTTDAYTQDANQLKMPGYTQVNLFGDYRVTDALTVALNVNNLFNTFGLTEAEEATI PANGIIRARSIAGRTTSISLRYDF
Specific function: This Receptor Binds The Ferrichrome-Iron Ligand. It Interacts With The Tonb Protein, Which Is Responsible For Energy Coupling Of The Ferrichrome-Promoted Iron Transport System. Acts As A Receptor For Bacteriophage T5 As Well As T1, Phi80 And Colicin M. B
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88749; Mature: 88749
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRERIAMSTLHTMRLHALACAVVSCLCAPAALAQDTAAAAPATPPAADSAAVNLDSVFVT CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHCCCCCCCCCCCCCEEEECEEEEE GTSTATTKLKSSVSVSTVGAEAVEQSAPRSTAEIFRNIPGIRSESSGGEGNANIAVRGLP CCCCHHHHHHCCCEEEECCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEE VASGGAKFLQLQEDGLPVMEFGDIAFGNSDIFLRSDFTLDRIEAIRGGSASTFTSNAPGG ECCCCCEEEEEECCCCCEEEECCEEECCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCH IINFISKTGDTAGGSVGVSRGLDYDNTRIDFNYGAPFAEQWQFNIGGFFRQGDGVRDAGY HHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEECCCCHHHCEEECCCCEEECCCCCCCCCC TTDKGGQLKANLTRLFHNGYVRVYGKYLNDRAAGYLPVPTSVRGRDGSPDLGGFPGFDPG CCCCCCEEHHHHHHHHHCCEEEEEEEHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC NDTLYSRNFRTDVGLDGNNQPRRTDLGDGMHPISRTIGAEAWFDLGNGWNLSEKFRVADN CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHEEECCCCCCCCCEEEEECC SGRFVSPFPVEVTDAASLAASIGGAGAQLVQASGPDAGQAYTGNAIRTHLFNVAINDLGN CCCCCCCCCCEECCHHHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHCC VTNDLSVSREFGGDGRTLNLRMGYYSSRQTIDMDWTWNSYVQSLGRNSRLLNVVDAAGVS CCCCCEEHHHCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHCCCCCCEEEEEHHCCCC RSQNGLYAYGTPFWGDCCVTRSYDVRYDVNAPYVALTFDSGKFSIDGSLRYDMGDARGSY CCCCCEEEECCCCCCCEEEECCCEEEEECCCCEEEEEECCCEEEECCEEEECCCCCCCCC NGTAIAQNLDVNGDGVIQPVEQRVATVDTANSRPVDYDWNYLSYSLGGNYLITDDLGAFA CCCEEEEECCCCCCCCCHHHHHHHHEEECCCCCCCCCCCCEEEEECCCCEEEECCCCHHH RISRGARANADRLLFGVVRDDGSVSSEEGVNVVRQAEAGLKWRRDGLSLFATAFSARTQE HHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCC QNFEITSQRFFNRSYEAHGVELEASYRYEGFTLNGGLTWTDAEISRDQITPENAGNVPRR CCCEEHHHHHHCCCCCCCCEEEEEEEEECCEEECCCEEEECCCCCCCCCCCCCCCCCCCC QADVVWQLTPSYRGDNYQFGVNLIGTTDAYTQDANQLKMPGYTQVNLFGDYRVTDALTVA CCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECEEECEEEEEE LNVNNLFNTFGLTEAEEATIPANGIIRARSIAGRTTSISLRYDF EECCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC >Mature Secondary Structure MRERIAMSTLHTMRLHALACAVVSCLCAPAALAQDTAAAAPATPPAADSAAVNLDSVFVT CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHCCCCCCCCCCCCCEEEECEEEEE GTSTATTKLKSSVSVSTVGAEAVEQSAPRSTAEIFRNIPGIRSESSGGEGNANIAVRGLP CCCCHHHHHHCCCEEEECCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEE VASGGAKFLQLQEDGLPVMEFGDIAFGNSDIFLRSDFTLDRIEAIRGGSASTFTSNAPGG ECCCCCEEEEEECCCCCEEEECCEEECCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCH IINFISKTGDTAGGSVGVSRGLDYDNTRIDFNYGAPFAEQWQFNIGGFFRQGDGVRDAGY HHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEECCCCHHHCEEECCCCEEECCCCCCCCCC TTDKGGQLKANLTRLFHNGYVRVYGKYLNDRAAGYLPVPTSVRGRDGSPDLGGFPGFDPG CCCCCCEEHHHHHHHHHCCEEEEEEEHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC NDTLYSRNFRTDVGLDGNNQPRRTDLGDGMHPISRTIGAEAWFDLGNGWNLSEKFRVADN CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHEEECCCCCCCCCEEEEECC SGRFVSPFPVEVTDAASLAASIGGAGAQLVQASGPDAGQAYTGNAIRTHLFNVAINDLGN CCCCCCCCCCEECCHHHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHCC VTNDLSVSREFGGDGRTLNLRMGYYSSRQTIDMDWTWNSYVQSLGRNSRLLNVVDAAGVS CCCCCEEHHHCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHCCCCCCEEEEEHHCCCC RSQNGLYAYGTPFWGDCCVTRSYDVRYDVNAPYVALTFDSGKFSIDGSLRYDMGDARGSY CCCCCEEEECCCCCCCEEEECCCEEEEECCCCEEEEEECCCEEEECCEEEECCCCCCCCC NGTAIAQNLDVNGDGVIQPVEQRVATVDTANSRPVDYDWNYLSYSLGGNYLITDDLGAFA CCCEEEEECCCCCCCCCHHHHHHHHEEECCCCCCCCCCCCEEEEECCCCEEEECCCCHHH RISRGARANADRLLFGVVRDDGSVSSEEGVNVVRQAEAGLKWRRDGLSLFATAFSARTQE HHHCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCC QNFEITSQRFFNRSYEAHGVELEASYRYEGFTLNGGLTWTDAEISRDQITPENAGNVPRR CCCEEHHHHHHCCCCCCCCEEEEEEEEECCEEECCCEEEECCCCCCCCCCCCCCCCCCCC QADVVWQLTPSYRGDNYQFGVNLIGTTDAYTQDANQLKMPGYTQVNLFGDYRVTDALTVA CCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECEEECEEEEEE LNVNNLFNTFGLTEAEEATIPANGIIRARSIAGRTTSISLRYDF EECCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA