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The map label for this gene is ymdB [C]

Identifier: 21244068

GI number: 21244068

Start: 3938571

End: 3939158

Strand: Direct

Name: ymdB [C]

Synonym: XAC3343

Alternate gene names: 21244068

Gene position: 3938571-3939158 (Clockwise)

Preceding gene: 21244067

Following gene: 21244078

Centisome position: 76.1

GC content: 61.9

Gene sequence:

>588_bases
GTGCTCCCCATCACGCGCCCATCATGCAATTCGCATAATTATCGCGCTATGAGAATCGAAGTCTGGCAAGGCGACATCAC
CGAACTCGACGTCGACGTCATCGTCAACGCCGCCAACGAATCCCTGCTCGGCGGTGGTGGCGTCGATGGCGCCATCCACC
GTGCCGCCGGCCCGCGCTTGCTGGAAGCCTGCGAAGCACTGCCGCAAGTGCGTCCAGGCGTGCGTTGTCCCACCGGCGAA
ATCCGCATCACCGACGGCTTCGATCTGAAGGCACGCCACATCTTTCATACCGTTGGCCCGGTGTGGCGCGACGGCAGGCA
TAACGAGCCCGAACAGCTGGCCAATTGCTATTGGCAATCGCTGAAACTCGCCGAACAGATGATGCTGCACTCGATTGCGT
TCCCGGCGATCAGCTGCGGGATTTACGGCTACCCGCTGCATCAGGCGGCCCGCATCGCCGTGACCGAAACGCGCGATTGG
CAGCGCTCGCACAAGGTGCCCAAGCACATCGTCTTGGTGGCCTATAACGAGGCGACCTATAAGGCCTACCAGCAAGCGTT
GGCGACGCAGGAAACTGCGGCGGCCTGA

Upstream 100 bases:

>100_bases
CCAAGAGAGCGCCCGGCCCGACACGGGACGGCATGCATTCACCCCGTCAGACAGTCGCAGCAGGTGAGATGAATGGCCGA
TAGCGTGCCGATTCCGCAGC

Downstream 100 bases:

>100_bases
GATTGGATTGACGTGGGCAGCATGTCGCATCGACCGGCTGGATGAGCAATCCATGGAGCGATGTTGATTGAGCAAAGGGC
GCCGAGCGGCGCCCTTTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MLPITRPSCNSHNYRAMRIEVWQGDITELDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPQVRPGVRCPTGE
IRITDGFDLKARHIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLHQAARIAVTETRDW
QRSHKVPKHIVLVAYNEATYKAYQQALATQETAAA

Sequences:

>Translated_195_residues
MLPITRPSCNSHNYRAMRIEVWQGDITELDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPQVRPGVRCPTGE
IRITDGFDLKARHIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLHQAARIAVTETRDW
QRSHKVPKHIVLVAYNEATYKAYQQALATQETAAA
>Mature_195_residues
MLPITRPSCNSHNYRAMRIEVWQGDITELDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPQVRPGVRCPTGE
IRITDGFDLKARHIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLHQAARIAVTETRDW
QRSHKVPKHIVLVAYNEATYKAYQQALATQETAAA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=174, Percent_Identity=47.1264367816092, Blast_Score=156, Evalue=9e-39,
Organism=Homo sapiens, GI13569840, Length=172, Percent_Identity=42.4418604651163, Blast_Score=141, Evalue=3e-34,
Organism=Homo sapiens, GI207450721, Length=171, Percent_Identity=34.5029239766082, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI8923143, Length=171, Percent_Identity=34.5029239766082, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI154813199, Length=175, Percent_Identity=36.5714285714286, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI226371716, Length=184, Percent_Identity=31.5217391304348, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI226371714, Length=184, Percent_Identity=31.5217391304348, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI226371712, Length=184, Percent_Identity=31.5217391304348, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI226371718, Length=184, Percent_Identity=31.5217391304348, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI226371710, Length=184, Percent_Identity=31.5217391304348, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI226371706, Length=184, Percent_Identity=31.5217391304348, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI165377137, Length=151, Percent_Identity=28.476821192053, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=52.0231213872832, Blast_Score=171, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17538214, Length=185, Percent_Identity=41.0810810810811, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24586353, Length=155, Percent_Identity=33.5483870967742, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 21650; Mature: 21650

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPITRPSCNSHNYRAMRIEVWQGDITELDVDVIVNAANESLLGGGGVDGAIHRAAGPRL
CCCCCCCCCCCCCEEEEEEEEECCCCCEEEHEEEEECCCCCCCCCCCCCCHHHHCCCHHH
LEACEALPQVRPGVRCPTGEIRITDGFDLKARHIFHTVGPVWRDGRHNEPEQLANCYWQS
HHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHH
LKLAEQMMLHSIAFPAISCGIYGYPLHQAARIAVTETRDWQRSHKVPKHIVLVAYNEATY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEECCCCHHHHCCCCCEEEEEEECCHHH
KAYQQALATQETAAA
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MLPITRPSCNSHNYRAMRIEVWQGDITELDVDVIVNAANESLLGGGGVDGAIHRAAGPRL
CCCCCCCCCCCCCEEEEEEEEECCCCCEEEHEEEEECCCCCCCCCCCCCCHHHHCCCHHH
LEACEALPQVRPGVRCPTGEIRITDGFDLKARHIFHTVGPVWRDGRHNEPEQLANCYWQS
HHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHH
LKLAEQMMLHSIAFPAISCGIYGYPLHQAARIAVTETRDWQRSHKVPKHIVLVAYNEATY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEECCCCHHHHCCCCCEEEEEEECCHHH
KAYQQALATQETAAA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]