| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is celF [H]
Identifier: 21243808
GI number: 21243808
Start: 3614460
End: 3615884
Strand: Direct
Name: celF [H]
Synonym: XAC3081
Alternate gene names: 21243808
Gene position: 3614460-3615884 (Clockwise)
Preceding gene: 21243807
Following gene: 21243809
Centisome position: 69.84
GC content: 70.18
Gene sequence:
>1425_bases ATGAGCAGTTCTGTCGACAATCGCAAGCTCACCCTGATCGGCGGCGGCGGCGTCCGCACACCCTTGGTGGTGTACGGCGT CAACGAAGCCGCCGAGGCGCTGGGCGCGCGCGAGATCGTGCTGTACGACCCCGATCAGGAGCGGCTGGCGCTGATGGTGG CGATGGGCCGCGCCGTCGTGGCCGACGCCGGCGGCGCGTTGCAGGTGCATGCGGCGCCCTCGCTGGAAGCGGCGATCGAA GGCGCGCATTTCGTGCTCAACAGCATCCGCGTCGGCGGCATCGCCCAGCGCGCCTCCGATGAGCAGACCATCATCGGCCA TGGCTATTCCGGCCAGGAGACCACCGGCCCGGGCGGCGTGGCCAAGGCGCTGCGCACGGTACCGGTGGCGATCGAACAGG CGCGCATGATCGAACGCCTGAGCCCGGACGCCTGGCTGGTGAGCTTCACCAACCCCGCCGGGCTGATCACCCAGGCCATC AGCGCACACACCCGCGCGCGCGTGGTCGGTATCTGCGATACGCCGGTGGAGTTGTTCCACAACATCGCACGCGCGCTCGG CGAGCCGGCTGCCGATGTGGAATGCGACTACGTCGGGCTCAATCATCTGGGCTGGATCCGCGCGGTGCGCCTGCGCGGCG AAGACATCCTCGACCGCGTGCTCGCCGACGACGCCATCCTGCGCCAGCTCTACCTGGCGCCCTTGTTCGACTTCGACATG CTGCGCGCACTGCGGCTGATCCCCACCGAATACCTGTATTTCTTCTACGAGCGCCGCCGCGCCCTGGAGAACCAGCGCGC CAGCGGCGCGAGCCGTGGCGGCGAGATCGAGCGGCTCAACCGCACCCTCATCGGCGACCTGCGCAGCCGGCTGGACGCCG GCGACACCACCGGTGCGGTACAGACCTATGCGGCCTATCTGGCGCAGCGCTCCGGCTCGTACATGAAGCTGGAGGCCGAG GCCGGCTCGGCCTTCGCGCCGGACCTGGCGCCGCAGCCGGACCCGTTCCGCGCCAGCACCGGCTATCACCGCATCGCGGT GGACGTGATGAGCGCGCTGACCGGCGCCCGGCCCGCGCGGCATGTCGTCAATGTGCGCAACCAGGGCGCGATGGGCGAGC TGGCCGACGACGACATCGTGGAAATCGCCGCAGACATCGATCGCGACCGCATCGTGCCGGTCCCGGCCGCGCCGCTGCCC AGCGCCGTGCAGGGGCTGGTGCACACGTTCAAGGCGTACGAGCACGCCGCCATCGAGGCGGCGCTCAGCGGCAGCCATCT GGACGCCTGCAAGGCGATGCTGATCCACCCGGCGATCGGCGAATGGAGCCCGGCGCGGCGGTTGCTGGACGAGTTGTTCG GCCACGCACACGACGATGGCCACTGCGCGGGGCCGGCACAGTGGCGTGGACATGCGGTGGGCTGA
Upstream 100 bases:
>100_bases GCGCACAGCACGGCTGCCACGCGGGCGCGGCCTGCTGCAGCGCGCTCGGTGCGCTCGACGGCCTGTTTCTCCTATCTCCC CCCACACACGAGGACGTTCC
Downstream 100 bases:
>100_bases TACCGAGGTTGATGCCGTGCCGTCGCTGCCGGTGGGGTCATGACACTGGCGTGCCGGTCGTCGGCGCGTTTCAACGCCGC CGGCAACGAAGACCCAGCGC
Product: 6-phospho-beta-glucosidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MSSSVDNRKLTLIGGGGVRTPLVVYGVNEAAEALGAREIVLYDPDQERLALMVAMGRAVVADAGGALQVHAAPSLEAAIE GAHFVLNSIRVGGIAQRASDEQTIIGHGYSGQETTGPGGVAKALRTVPVAIEQARMIERLSPDAWLVSFTNPAGLITQAI SAHTRARVVGICDTPVELFHNIARALGEPAADVECDYVGLNHLGWIRAVRLRGEDILDRVLADDAILRQLYLAPLFDFDM LRALRLIPTEYLYFFYERRRALENQRASGASRGGEIERLNRTLIGDLRSRLDAGDTTGAVQTYAAYLAQRSGSYMKLEAE AGSAFAPDLAPQPDPFRASTGYHRIAVDVMSALTGARPARHVVNVRNQGAMGELADDDIVEIAADIDRDRIVPVPAAPLP SAVQGLVHTFKAYEHAAIEAALSGSHLDACKAMLIHPAIGEWSPARRLLDELFGHAHDDGHCAGPAQWRGHAVG
Sequences:
>Translated_474_residues MSSSVDNRKLTLIGGGGVRTPLVVYGVNEAAEALGAREIVLYDPDQERLALMVAMGRAVVADAGGALQVHAAPSLEAAIE GAHFVLNSIRVGGIAQRASDEQTIIGHGYSGQETTGPGGVAKALRTVPVAIEQARMIERLSPDAWLVSFTNPAGLITQAI SAHTRARVVGICDTPVELFHNIARALGEPAADVECDYVGLNHLGWIRAVRLRGEDILDRVLADDAILRQLYLAPLFDFDM LRALRLIPTEYLYFFYERRRALENQRASGASRGGEIERLNRTLIGDLRSRLDAGDTTGAVQTYAAYLAQRSGSYMKLEAE AGSAFAPDLAPQPDPFRASTGYHRIAVDVMSALTGARPARHVVNVRNQGAMGELADDDIVEIAADIDRDRIVPVPAAPLP SAVQGLVHTFKAYEHAAIEAALSGSHLDACKAMLIHPAIGEWSPARRLLDELFGHAHDDGHCAGPAQWRGHAVG >Mature_473_residues SSSVDNRKLTLIGGGGVRTPLVVYGVNEAAEALGAREIVLYDPDQERLALMVAMGRAVVADAGGALQVHAAPSLEAAIEG AHFVLNSIRVGGIAQRASDEQTIIGHGYSGQETTGPGGVAKALRTVPVAIEQARMIERLSPDAWLVSFTNPAGLITQAIS AHTRARVVGICDTPVELFHNIARALGEPAADVECDYVGLNHLGWIRAVRLRGEDILDRVLADDAILRQLYLAPLFDFDML RALRLIPTEYLYFFYERRRALENQRASGASRGGEIERLNRTLIGDLRSRLDAGDTTGAVQTYAAYLAQRSGSYMKLEAEA GSAFAPDLAPQPDPFRASTGYHRIAVDVMSALTGARPARHVVNVRNQGAMGELADDDIVEIAADIDRDRIVPVPAAPLPS AVQGLVHTFKAYEHAAIEAALSGSHLDACKAMLIHPAIGEWSPARRLLDELFGHAHDDGHCAGPAQWRGHAVG
Specific function: Hydrolyzes phospho-beta-glucosides (Probable) [H]
COG id: COG1486
COG function: function code G; Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 4 family [H]
Homologues:
Organism=Escherichia coli, GI1788029, Length=446, Percent_Identity=27.8026905829596, Blast_Score=188, Evalue=6e-49, Organism=Escherichia coli, GI1790560, Length=441, Percent_Identity=24.4897959183673, Blast_Score=87, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019802 - InterPro: IPR001088 - InterPro: IPR022616 - InterPro: IPR015955 - InterPro: IPR016040 [H]
Pfam domain/function: PF02056 Glyco_hydro_4; PF11975 Glyco_hydro_4C [H]
EC number: =3.2.1.86 [H]
Molecular weight: Translated: 50808; Mature: 50677
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSVDNRKLTLIGGGGVRTPLVVYGVNEAAEALGAREIVLYDPDQERLALMVAMGRAVV CCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHE ADAGGALQVHAAPSLEAAIEGAHFVLNSIRVGGIAQRASDEQTIIGHGYSGQETTGPGGV ECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECCCCCCCCCCCHHH AKALRTVPVAIEQARMIERLSPDAWLVSFTNPAGLITQAISAHTRARVVGICDTPVELFH HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEEEECCCHHHHHH NIARALGEPAADVECDYVGLNHLGWIRAVRLRGEDILDRVLADDAILRQLYLAPLFDFDM HHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHH LRALRLIPTEYLYFFYERRRALENQRASGASRGGEIERLNRTLIGDLRSRLDAGDTTGAV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH QTYAAYLAQRSGSYMKLEAEAGSAFAPDLAPQPDPFRASTGYHRIAVDVMSALTGARPAR HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH HVVNVRNQGAMGELADDDIVEIAADIDRDRIVPVPAAPLPSAVQGLVHTFKAYEHAAIEA HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH ALSGSHLDACKAMLIHPAIGEWSPARRLLDELFGHAHDDGHCAGPAQWRGHAVG HHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SSSVDNRKLTLIGGGGVRTPLVVYGVNEAAEALGAREIVLYDPDQERLALMVAMGRAVV CCCCCCCEEEEEECCCCCCCEEEEECCHHHHHCCCCEEEEECCCHHHHHHHHHHCCHHE ADAGGALQVHAAPSLEAAIEGAHFVLNSIRVGGIAQRASDEQTIIGHGYSGQETTGPGGV ECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECCCCCCCCCCCHHH AKALRTVPVAIEQARMIERLSPDAWLVSFTNPAGLITQAISAHTRARVVGICDTPVELFH HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEEEECCCHHHHHH NIARALGEPAADVECDYVGLNHLGWIRAVRLRGEDILDRVLADDAILRQLYLAPLFDFDM HHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHH LRALRLIPTEYLYFFYERRRALENQRASGASRGGEIERLNRTLIGDLRSRLDAGDTTGAV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH QTYAAYLAQRSGSYMKLEAEAGSAFAPDLAPQPDPFRASTGYHRIAVDVMSALTGARPAR HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHH HVVNVRNQGAMGELADDDIVEIAADIDRDRIVPVPAAPLPSAVQGLVHTFKAYEHAAIEA HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH ALSGSHLDACKAMLIHPAIGEWSPARRLLDELFGHAHDDGHCAGPAQWRGHAVG HHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8990303; 9384377; 8969509 [H]