| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is csxA [H]
Identifier: 21243802
GI number: 21243802
Start: 3601027
End: 3603717
Strand: Direct
Name: csxA [H]
Synonym: XAC3075
Alternate gene names: 21243802
Gene position: 3601027-3603717 (Clockwise)
Preceding gene: 21243801
Following gene: 21243803
Centisome position: 69.58
GC content: 65.11
Gene sequence:
>2691_bases ATGCCCCTGTCCTGTCATCGTGTTGTTCCCACCCCCGCCCGTCTCGGGCTTGCCCTGGCCTTGGCCATCTCGCAGGCCTG GGCAGCGCCGCCCACGGCGGTGACGCTGGATGGCGGCTGGCGGGTGCGGCTGGTGCCGGGTCAGGAGCAGGGCAAGACGT ATCCGAAAGCAGCGGCGTGGCTGCCGGCGCAGGTGCCCGGCGCGGTGCAGACCGACCTGATCGCCGCCAAGATCGTGCCC GACCCGTTCTATCGCGACAACGAAGGCAAGATCCAGTGGGCCGGCCTGAGCGATTGGCAATACCAGACCCGCTTCACTGT CGATGCGGCCACGCTCAAGCGCGAACATGTCGAGTTGGTGTTCGACGGCCTGGACACGTTTGCCGAGGTCACCCTCAATG GCAAGCAGCTGCTCAGCGCCGACAACATGTTCCGGCAGTGGCGCGTGGACGCGAAATCCTTGCTCAAGCGCGGCGATAAC CTGCTGGAGGTCAAGCTGTATTCGCCGATCAAGAAGATCCAGCCGTGGCTGGCCAAGCAGCCGTATGCGCTGCCGGGTGC CTACGATTCGGCGTTCGGGGACGAGCCGGAGGCACGGCACAGCTCGACCTATGTGCGCAAGGCGCCGTACAACTTCGGTT GGGACTGGGGTCCGCGCATGGTCAACGCCGGCATCTGGAAGGATGTGCGCGTGGAAGCGTGGGATGCCGTGCGGGTGGAC GGGCTGCATATCGCCCAGCAACGGGTGGATGCGCACAGTGCGCAAGTGCAGGCGCAATTGGACCTGCAGGCCGGCCGCAG CGGCCCGGTGCAGGTGACGCTGGATGTACTGGGCCCGGATGGGCAAAAAGTCGGCCAGTTCACCCAGGACGCGGTGGTCG ATCCCGGCCAGAACCGCGTCGACCTGGCGGTGCGCATCGCCAATCCCAAGCGCTGGTTTCCGGCCGGTTACGGCGCGCAG GACCGCTACACCTTCGTCGCTAGCGTGCGCGATGCCGATGGCGACAGCCAGCAGATCAAGCGCGTCACCGGCCTGCGTTC GGTGGAGCTGCGTCGCGAAAAAGACCGGTTCGGCAAGAGCATGGAGATCGTGATCAACGGCATCCCGATCTTCGCCAAGG GGGCCAACCTGATTCCGCTGGATGCCTTCCCCGCACGTGTCACGCACGAGCGCATGCGCAGCACCTTGCAGGACGCGCGC GATGCCAACATGAACATGCTGCGCATGTGGGGCGGCGGGCATTACCAGGACGACTATTTTTACGACGTCGCCGACGAGCT TGGCATCATGATCTGGCAGGACTTCATGTTCGGCGGCGCGGTACCGCCATACGACGTGGAGTTCCGCGAGAACACCCGGC AGGAGGCGATCGAGCAGGTCAAGCGGCTGCGCGATCACCCCAGTCTCGTGTTGTGGTGCGGCAACAACGAAGTGCAGACC GGTTGGGAAAACTGGGGCGACCGGGTCAAGTTCAAGCAGTCGGTGGACCCGGAAGAACGCACCCGCATCGAACGCGGCAT GACCACCTTGTTCGGCACCGTGTTCCGCGAAGTGGTGGCCACCTACGACAGCGATGTGCCGTACTGGGCCACCTCGCCGG GCACCGATTTCGATGGCGCGGCCGACCAGACCAACGATGGCGACATGCATTACTGGAAGGTGTGGGGCGGCCCTGCCCTG CCGGTCACCGAATACCTCAACGTCACCCCGCGCTTCATGTCCGAGTACGGCCTGCAGTCGTTCCCCGATATGCGCACCGT GCGTGCATTTGCCGAGCCCGGCGACATGGACCCGGAATCGCCGGTGATGCGCGTGCATCAGAAGTTCGACAAGGGCAACG GCAACAAGCGGCTGATGCTCTACATCCGCCGCGAATTCGGCGAGCCCAAGGATTTCGAAAGCTTCGTCTACCTGAGCCAG CTGATGCAGGCCGAAGGCATCAACATCGCGGCCTCTCATCTGCGCGCCTCGCGCCCGCAGTCGATGGGTTCGCTGTACTG GCAGCTCAACGATGTGTGGCCGGGTGCGTCGTGGTCCAGCGTGGATTACTACGGCCGCTGGAAGGCGCTGCATTACCATG CACGCCGCTTCTACGCTCCGGAAATGATCGCCGCGTTGCGCAACGACAAGGGCCAGACCGAGGTGTCGCTGGTGTCCGAC CGCACCACCCCGCTGACGGCACGCTGGCGCATGCGGGTGATGGGCATGGATGGCAAGGTGCTGAGCAAGCGCGAGGAAAA AGCCAGCGTCAACGCGCTGAGCAGCCAACACGTGGGCAACTTCAGCGACAAGCAATTGCTGGGCAGCGCCGATCCCAAGC GCACCTACGCGGTGTTCGAGCTGCTGGACGGCGACACGTTGCTGTCGCGTGAGGTGGTGTTCTTCGCGCCGGCCAAGCAG CTCGCCTTGCCGGCTGCGAAGATCGACAGCCAGTGGCGTGCCGATGGCGATGGCTACGCACTCACCCTGACCAGCGACAC GCTGGCGCGCGAAGTATGGCTATCGTTCGGCGATGTGGATGCCACGCTCTCGGACAACGCCTTCGACCTGCTGCCGGGCG AGCCGTTGACCGTACGCGTGACCAGCAAGGCGGCGCTGGCGCAGTTGCAATCGGCGCTGCAGGTGCGCGACCTGGCCGCC ACGCTGGCTGGTGCGCCGCCGGAGCCGCAGGAGGCAGCGGCTGCGAAATGA
Upstream 100 bases:
>100_bases TCGCGGCCCCCTGTACGCCATCGGCGCCGTTCAATTGATTGAAACCACTGCGCAGGCGCCCCCCGCCGCCACGCGCTGAG CCACCCTAGGAGAGTCACGC
Downstream 100 bases:
>100_bases AGAGCGGCGCGGCCCCTCATCCGCCCTTCGGGCACCTTCTCCCGCTGGCGGGAGAAGGTGCCCGAAGGGCGGATGAGGGC CGCTCCCGCACCACACCGCA
Product: beta-mannosidase
Products: NA
Alternate protein names: GlcNase; Exochitinase [H]
Number of amino acids: Translated: 896; Mature: 895
Protein sequence:
>896_residues MPLSCHRVVPTPARLGLALALAISQAWAAPPTAVTLDGGWRVRLVPGQEQGKTYPKAAAWLPAQVPGAVQTDLIAAKIVP DPFYRDNEGKIQWAGLSDWQYQTRFTVDAATLKREHVELVFDGLDTFAEVTLNGKQLLSADNMFRQWRVDAKSLLKRGDN LLEVKLYSPIKKIQPWLAKQPYALPGAYDSAFGDEPEARHSSTYVRKAPYNFGWDWGPRMVNAGIWKDVRVEAWDAVRVD GLHIAQQRVDAHSAQVQAQLDLQAGRSGPVQVTLDVLGPDGQKVGQFTQDAVVDPGQNRVDLAVRIANPKRWFPAGYGAQ DRYTFVASVRDADGDSQQIKRVTGLRSVELRREKDRFGKSMEIVINGIPIFAKGANLIPLDAFPARVTHERMRSTLQDAR DANMNMLRMWGGGHYQDDYFYDVADELGIMIWQDFMFGGAVPPYDVEFRENTRQEAIEQVKRLRDHPSLVLWCGNNEVQT GWENWGDRVKFKQSVDPEERTRIERGMTTLFGTVFREVVATYDSDVPYWATSPGTDFDGAADQTNDGDMHYWKVWGGPAL PVTEYLNVTPRFMSEYGLQSFPDMRTVRAFAEPGDMDPESPVMRVHQKFDKGNGNKRLMLYIRREFGEPKDFESFVYLSQ LMQAEGINIAASHLRASRPQSMGSLYWQLNDVWPGASWSSVDYYGRWKALHYHARRFYAPEMIAALRNDKGQTEVSLVSD RTTPLTARWRMRVMGMDGKVLSKREEKASVNALSSQHVGNFSDKQLLGSADPKRTYAVFELLDGDTLLSREVVFFAPAKQ LALPAAKIDSQWRADGDGYALTLTSDTLAREVWLSFGDVDATLSDNAFDLLPGEPLTVRVTSKAALAQLQSALQVRDLAA TLAGAPPEPQEAAAAK
Sequences:
>Translated_896_residues MPLSCHRVVPTPARLGLALALAISQAWAAPPTAVTLDGGWRVRLVPGQEQGKTYPKAAAWLPAQVPGAVQTDLIAAKIVP DPFYRDNEGKIQWAGLSDWQYQTRFTVDAATLKREHVELVFDGLDTFAEVTLNGKQLLSADNMFRQWRVDAKSLLKRGDN LLEVKLYSPIKKIQPWLAKQPYALPGAYDSAFGDEPEARHSSTYVRKAPYNFGWDWGPRMVNAGIWKDVRVEAWDAVRVD GLHIAQQRVDAHSAQVQAQLDLQAGRSGPVQVTLDVLGPDGQKVGQFTQDAVVDPGQNRVDLAVRIANPKRWFPAGYGAQ DRYTFVASVRDADGDSQQIKRVTGLRSVELRREKDRFGKSMEIVINGIPIFAKGANLIPLDAFPARVTHERMRSTLQDAR DANMNMLRMWGGGHYQDDYFYDVADELGIMIWQDFMFGGAVPPYDVEFRENTRQEAIEQVKRLRDHPSLVLWCGNNEVQT GWENWGDRVKFKQSVDPEERTRIERGMTTLFGTVFREVVATYDSDVPYWATSPGTDFDGAADQTNDGDMHYWKVWGGPAL PVTEYLNVTPRFMSEYGLQSFPDMRTVRAFAEPGDMDPESPVMRVHQKFDKGNGNKRLMLYIRREFGEPKDFESFVYLSQ LMQAEGINIAASHLRASRPQSMGSLYWQLNDVWPGASWSSVDYYGRWKALHYHARRFYAPEMIAALRNDKGQTEVSLVSD RTTPLTARWRMRVMGMDGKVLSKREEKASVNALSSQHVGNFSDKQLLGSADPKRTYAVFELLDGDTLLSREVVFFAPAKQ LALPAAKIDSQWRADGDGYALTLTSDTLAREVWLSFGDVDATLSDNAFDLLPGEPLTVRVTSKAALAQLQSALQVRDLAA TLAGAPPEPQEAAAAK >Mature_895_residues PLSCHRVVPTPARLGLALALAISQAWAAPPTAVTLDGGWRVRLVPGQEQGKTYPKAAAWLPAQVPGAVQTDLIAAKIVPD PFYRDNEGKIQWAGLSDWQYQTRFTVDAATLKREHVELVFDGLDTFAEVTLNGKQLLSADNMFRQWRVDAKSLLKRGDNL LEVKLYSPIKKIQPWLAKQPYALPGAYDSAFGDEPEARHSSTYVRKAPYNFGWDWGPRMVNAGIWKDVRVEAWDAVRVDG LHIAQQRVDAHSAQVQAQLDLQAGRSGPVQVTLDVLGPDGQKVGQFTQDAVVDPGQNRVDLAVRIANPKRWFPAGYGAQD RYTFVASVRDADGDSQQIKRVTGLRSVELRREKDRFGKSMEIVINGIPIFAKGANLIPLDAFPARVTHERMRSTLQDARD ANMNMLRMWGGGHYQDDYFYDVADELGIMIWQDFMFGGAVPPYDVEFRENTRQEAIEQVKRLRDHPSLVLWCGNNEVQTG WENWGDRVKFKQSVDPEERTRIERGMTTLFGTVFREVVATYDSDVPYWATSPGTDFDGAADQTNDGDMHYWKVWGGPALP VTEYLNVTPRFMSEYGLQSFPDMRTVRAFAEPGDMDPESPVMRVHQKFDKGNGNKRLMLYIRREFGEPKDFESFVYLSQL MQAEGINIAASHLRASRPQSMGSLYWQLNDVWPGASWSSVDYYGRWKALHYHARRFYAPEMIAALRNDKGQTEVSLVSDR TTPLTARWRMRVMGMDGKVLSKREEKASVNALSSQHVGNFSDKQLLGSADPKRTYAVFELLDGDTLLSREVVFFAPAKQL ALPAAKIDSQWRADGDGYALTLTSDTLAREVWLSFGDVDATLSDNAFDLLPGEPLTVRVTSKAALAQLQSALQVRDLAAT LAGAPPEPQEAAAAK
Specific function: Hydrolyzes chitosan and chitooligosaccharides with retention of anomeric configuration. Has maximum activity on chitotetraose, chitopentaose and their corresponding alcohols, with a slight decrease in the rate of hydrolysis on longer chains. Has no activi
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Secreted, extracellular space [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]
Homologues:
Organism=Homo sapiens, GI84798622, Length=873, Percent_Identity=30.2405498281787, Blast_Score=369, Evalue=1e-101, Organism=Caenorhabditis elegans, GI17550784, Length=927, Percent_Identity=24.9190938511327, Blast_Score=246, Evalue=5e-65, Organism=Drosophila melanogaster, GI24643838, Length=697, Percent_Identity=29.9856527977045, Blast_Score=285, Evalue=1e-76, Organism=Drosophila melanogaster, GI24643840, Length=628, Percent_Identity=30.4140127388535, Blast_Score=251, Evalue=2e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005084 - InterPro: IPR008979 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR006102 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF03422 CBM_6; PF00703 Glyco_hydro_2; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.165 [H]
Molecular weight: Translated: 100376; Mature: 100245
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSCHRVVPTPARLGLALALAISQAWAAPPTAVTLDGGWRVRLVPGQEQGKTYPKAAAW CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCHHCCCCCCCHHCC LPAQVPGAVQTDLIAAKIVPDPFYRDNEGKIQWAGLSDWQYQTRFTVDAATLKREHVELV CCCCCCCCHHHHHEEEEECCCCCEECCCCEEEEECCCCCCEEEEEEEEHHHHHHHHHHHH FDGLDTFAEVTLNGKQLLSADNMFRQWRVDAKSLLKRGDNLLEVKLYSPIKKIQPWLAKQ HHHHHHHHHEEECCHHHHHHHHHHHHHHHCHHHHHHCCCCEEEEEECCCHHHHHHHHHCC PYALPGAYDSAFGDEPEARHSSTYVRKAPYNFGWDWGPRMVNAGIWKDVRVEAWDAVRVD CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCEEEECCEEEEC GLHIAQQRVDAHSAQVQAQLDLQAGRSGPVQVTLDVLGPDGQKVGQFTQDAVVDPGQNRV CHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCE DLAVRIANPKRWFPAGYGAQDRYTFVASVRDADGDSQQIKRVTGLRSVELRREKDRFGKS EEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCE MEIVINGIPIFAKGANLIPLDAFPARVTHERMRSTLQDARDANMNMLRMWGGGHYQDDYF EEEEEECCEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCE YDVADELGIMIWQDFMFGGAVPPYDVEFRENTRQEAIEQVKRLRDHPSLVLWCGNNEVQT EECHHHHHHHHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCC GWENWGDRVKFKQSVDPEERTRIERGMTTLFGTVFREVVATYDSDVPYWATSPGTDFDGA CHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC ADQTNDGDMHYWKVWGGPALPVTEYLNVTPRFMSEYGLQSFPDMRTVRAFAEPGDMDPES CCCCCCCCEEEEEEECCCCCCHHHHHCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCC PVMRVHQKFDKGNGNKRLMLYIRREFGEPKDFESFVYLSQLMQAEGINIAASHLRASRPQ HHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCC SMGSLYWQLNDVWPGASWSSVDYYGRWKALHYHARRFYAPEMIAALRNDKGQTEVSLVSD CCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEC RTTPLTARWRMRVMGMDGKVLSKREEKASVNALSSQHVGNFSDKQLLGSADPKRTYAVFE CCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEEE LLDGDTLLSREVVFFAPAKQLALPAAKIDSQWRADGDGYALTLTSDTLAREVWLSFGDVD EECCCCEECCCEEEEECHHHHHCCHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCC ATLSDNAFDLLPGEPLTVRVTSKAALAQLQSALQVRDLAATLAGAPPEPQEAAAAK EEECCCCEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC >Mature Secondary Structure PLSCHRVVPTPARLGLALALAISQAWAAPPTAVTLDGGWRVRLVPGQEQGKTYPKAAAW CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCHHCCCCCCCHHCC LPAQVPGAVQTDLIAAKIVPDPFYRDNEGKIQWAGLSDWQYQTRFTVDAATLKREHVELV CCCCCCCCHHHHHEEEEECCCCCEECCCCEEEEECCCCCCEEEEEEEEHHHHHHHHHHHH FDGLDTFAEVTLNGKQLLSADNMFRQWRVDAKSLLKRGDNLLEVKLYSPIKKIQPWLAKQ HHHHHHHHHEEECCHHHHHHHHHHHHHHHCHHHHHHCCCCEEEEEECCCHHHHHHHHHCC PYALPGAYDSAFGDEPEARHSSTYVRKAPYNFGWDWGPRMVNAGIWKDVRVEAWDAVRVD CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCEEEECCEEEEC GLHIAQQRVDAHSAQVQAQLDLQAGRSGPVQVTLDVLGPDGQKVGQFTQDAVVDPGQNRV CHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCE DLAVRIANPKRWFPAGYGAQDRYTFVASVRDADGDSQQIKRVTGLRSVELRREKDRFGKS EEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCE MEIVINGIPIFAKGANLIPLDAFPARVTHERMRSTLQDARDANMNMLRMWGGGHYQDDYF EEEEEECCEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCE YDVADELGIMIWQDFMFGGAVPPYDVEFRENTRQEAIEQVKRLRDHPSLVLWCGNNEVQT EECHHHHHHHHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCC GWENWGDRVKFKQSVDPEERTRIERGMTTLFGTVFREVVATYDSDVPYWATSPGTDFDGA CHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC ADQTNDGDMHYWKVWGGPALPVTEYLNVTPRFMSEYGLQSFPDMRTVRAFAEPGDMDPES CCCCCCCCEEEEEEECCCCCCHHHHHCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCC PVMRVHQKFDKGNGNKRLMLYIRREFGEPKDFESFVYLSQLMQAEGINIAASHLRASRPQ HHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCC SMGSLYWQLNDVWPGASWSSVDYYGRWKALHYHARRFYAPEMIAALRNDKGQTEVSLVSD CCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEC RTTPLTARWRMRVMGMDGKVLSKREEKASVNALSSQHVGNFSDKQLLGSADPKRTYAVFE CCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEEE LLDGDTLLSREVVFFAPAKQLALPAAKIDSQWRADGDGYALTLTSDTLAREVWLSFGDVD EECCCCEECCCEEEEECHHHHHCCHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCC ATLSDNAFDLLPGEPLTVRVTSKAALAQLQSALQVRDLAATLAGAPPEPQEAAAAK EEECCCCEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA