| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is purN [H]
Identifier: 21243688
GI number: 21243688
Start: 3466187
End: 3466855
Strand: Direct
Name: purN [H]
Synonym: XAC2961
Alternate gene names: 21243688
Gene position: 3466187-3466855 (Clockwise)
Preceding gene: 21243687
Following gene: 77748684
Centisome position: 66.97
GC content: 69.51
Gene sequence:
>669_bases ATGCCCGCACCTGACGCCCCATTACGCCTGGCCGTACTGGCCTCCGGCCGTGGCAGCAATCTGCAGGCCATTGTCGATGC GATCGCCAGTGGGCGTCTGCATGCCGAGGTGGTCGGCGTGTTTTCCGATCGCCCGCAGGCGCCAGCCTTGCAGAAGGTCG AGCCGGCGCGTCGCTGGAGCGCCAGCCCGCGCGATTTCGCCGACCGTGCCGCGTTCGATGCCGCACTTGGCCAGGCGATC GCGGCAGCGCAGCCGGACTGGGTGATCTGCGCCGGCTACATGCGCATCCTGGGCGAGCCGTTGGTGCGCCGTTTCGCCGG GCGCATGCTCAACATCCATCCCTCGCTGCTACCCAAATACCGCGGCCTGCACACGCACGCGCGCGCGCTGGAAGCCGGCG ATGCAGAGCATGGTGCCAGCGTGCATCTGGTGGTGCCGGAGCTGGATGCCGGCGCGGTGATCGCGCAGGCGCGCGTCCCG GTCCTGCCCGGCGACAGTGCCGAACAACTGGCGGCGCGGGTGCTGGCGCGCGAGCACCCGCTGCTCCTGGCCACGCTGGA GGTGCTTGCCAGTGGCCGCGTCGCGGTGCATGGCGACACCGTGCTTATCGACGGTCAGTGCCTGTTTACGCCACTGCGAC TAGAGTCCGCAAACACCGCACTCGCCTGA
Upstream 100 bases:
>100_bases TTGGCGTCTTTACGCTGGTGACGCTGCTGCGCCCGCAGGTCAAGGCTCTGTTCGGTGTCGGCAACGCTGCGGCTTGAGAT GTTTGTGAGCCTACTCTCCA
Downstream 100 bases:
>100_bases ATGCGGAAGACATCTCCCTCATCCCGTCTCGGACATCCTTGCGGCCTCCGTGCCCGCCACCAGCGCATGAACGTCATCCC GATCGCCGCCGCGCTGTTAA
Product: phosphoribosylglycinamide formyltransferase
Products: NA
Alternate protein names: 5'-phosphoribosylglycinamide transformylase; GAR transformylase; GART [H]
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MPAPDAPLRLAVLASGRGSNLQAIVDAIASGRLHAEVVGVFSDRPQAPALQKVEPARRWSASPRDFADRAAFDAALGQAI AAAQPDWVICAGYMRILGEPLVRRFAGRMLNIHPSLLPKYRGLHTHARALEAGDAEHGASVHLVVPELDAGAVIAQARVP VLPGDSAEQLAARVLAREHPLLLATLEVLASGRVAVHGDTVLIDGQCLFTPLRLESANTALA
Sequences:
>Translated_222_residues MPAPDAPLRLAVLASGRGSNLQAIVDAIASGRLHAEVVGVFSDRPQAPALQKVEPARRWSASPRDFADRAAFDAALGQAI AAAQPDWVICAGYMRILGEPLVRRFAGRMLNIHPSLLPKYRGLHTHARALEAGDAEHGASVHLVVPELDAGAVIAQARVP VLPGDSAEQLAARVLAREHPLLLATLEVLASGRVAVHGDTVLIDGQCLFTPLRLESANTALA >Mature_221_residues PAPDAPLRLAVLASGRGSNLQAIVDAIASGRLHAEVVGVFSDRPQAPALQKVEPARRWSASPRDFADRAAFDAALGQAIA AAQPDWVICAGYMRILGEPLVRRFAGRMLNIHPSLLPKYRGLHTHARALEAGDAEHGASVHLVVPELDAGAVIAQARVPV LPGDSAEQLAARVLAREHPLLLATLEVLASGRVAVHGDTVLIDGQCLFTPLRLESANTALA
Specific function: De novo purine biosynthesis; third step. [C]
COG id: COG0299
COG function: function code F; Folate-dependent phosphoribosylglycinamide formyltransferase PurN
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GART family [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=190, Percent_Identity=40.5263157894737, Blast_Score=138, Evalue=5e-33, Organism=Homo sapiens, GI209869995, Length=190, Percent_Identity=40.5263157894737, Blast_Score=138, Evalue=5e-33, Organism=Homo sapiens, GI209869993, Length=190, Percent_Identity=40.5263157894737, Blast_Score=138, Evalue=5e-33, Organism=Escherichia coli, GI1788846, Length=203, Percent_Identity=46.3054187192118, Blast_Score=177, Evalue=4e-46, Organism=Escherichia coli, GI1787483, Length=135, Percent_Identity=34.8148148148148, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788589, Length=117, Percent_Identity=31.6239316239316, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17567511, Length=175, Percent_Identity=32, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6320616, Length=208, Percent_Identity=32.6923076923077, Blast_Score=82, Evalue=6e-17, Organism=Drosophila melanogaster, GI24582400, Length=188, Percent_Identity=45.7446808510638, Blast_Score=154, Evalue=6e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR001555 - InterPro: IPR004607 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =2.1.2.2 [H]
Molecular weight: Translated: 23399; Mature: 23268
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAPDAPLRLAVLASGRGSNLQAIVDAIASGRLHAEVVGVFSDRPQAPALQKVEPARRWS CCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHCCHHHHCC ASPRDFADRAAFDAALGQAIAAAQPDWVICAGYMRILGEPLVRRFAGRMLNIHPSLLPKY CCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCEEECCHHHHHHH RGLHTHARALEAGDAEHGASVHLVVPELDAGAVIAQARVPVLPGDSAEQLAARVLAREHP CCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC LLLATLEVLASGRVAVHGDTVLIDGQCLFTPLRLESANTALA HHHHHHHHHHCCCEEEECCEEEECCCEEEEEEEECCCCCCCC >Mature Secondary Structure PAPDAPLRLAVLASGRGSNLQAIVDAIASGRLHAEVVGVFSDRPQAPALQKVEPARRWS CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHCCHHHHCC ASPRDFADRAAFDAALGQAIAAAQPDWVICAGYMRILGEPLVRRFAGRMLNIHPSLLPKY CCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCEEECCHHHHHHH RGLHTHARALEAGDAEHGASVHLVVPELDAGAVIAQARVPVLPGDSAEQLAARVLAREHP CCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC LLLATLEVLASGRVAVHGDTVLIDGQCLFTPLRLESANTALA HHHHHHHHHHCCCEEEECCEEEECCCEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3301838; 9205837; 9278503; 10954745; 2204419; 1522592; 1631098; 9698564; 10606510 [H]