| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is fhuA [H]
Identifier: 21243668
GI number: 21243668
Start: 3445454
End: 3447784
Strand: Direct
Name: fhuA [H]
Synonym: XAC2941
Alternate gene names: 21243668
Gene position: 3445454-3447784 (Clockwise)
Preceding gene: 21243667
Following gene: 21243669
Centisome position: 66.57
GC content: 63.92
Gene sequence:
>2331_bases TTGAGACTTTCCATGACGCCTAGCATTTCCCCGCTCGCTTCGGCCGTGTTGCTGACGCTGTCCGCTCCCGCTTTCGCCCA GCCCGACGATGTGTCGGCGCCCCCAGGGGCGGTGGATCTGGATGCGATCCGGGTGCAGCAGGAACGTGCGCAGAAGCCGT CTTCGCCCAAGTACACAGAAGCCCTGCGCGACACGCCGCAGACCATCACCGTGGTCACCAAGCAGACCATGGACCAGCAG AATCTGCTGTCGCTGCGCGATGTGCTCAGCACCCTACCCGGCATCACCTTCGGCGCGGGCGAAGGCGGTGGCGGCTACGG CGACAGCATCAACCTGCGCGGCTTCACCGCCAGCAGCGACATCACCACCGACGGCGTGCGCGACAGCGCGCAGTACAGCC GCAGCGACACCTTCAACCTCGAATCCGTCGAGCTCATCAACGGTGCCAACTCTGCGATGTCCGGCGCAGGCTCGGTGGGC GGCAACATCAACCTGGTCACCAAGAGCGCCGGCCAGGGCAACTTCACCAACGTCATGATCGGCGGCGGCAGCGACCGTTA CGGCCGCCTCACGGCCGATAGCAATTACGACTTCGAAAACGGCACCGCCGTGCGCTTGAATGCGATGGGCCACACCCAGG ACGTGCCGGGCCGCGACGAAGAATTCCGTCACCGTTGGGGCGTTGCGCCGTCGGTGGCCTTCGGCCTGGGTTCGGACACG CGCTTTACGCTGAGCTACTTGCACCAGCACGACAACAACCTGCCGCAATACGGCGTGCCGTTCGCGCTCAGCCCGTTCAA CGATGGCCCGTTGCCGGGCGTGGACCGCGAAACCTATTACGGCTATCGCAATGTGTCGCGTCAGGAGATCGACGTGGACA TGCTCACCGGCGTGCTGGAAATGGACTTCGACGACAACGTCAAACTGCGCAGCCTGGCGCGCTTGCAGCGCGTGGATCAG AGCACCACCGCCACCGCACCTGAGGGCACCTGGTGCCTGCCCAACAACACCAACGCCTACACCGGCCGCGCGTGCGTGGG CCAGCCGCCGTCGACCTGGAACCCCAACAGCGGGCCACGCGGACTGGTGCGCGACACCGAAAACTTCATCGCACATAGCC AAACCGATCTGACCGCCACGCTGCACACCGGTGCAATCGAACATCGCGTGGTCGCCGGCGTCGCCTTCAGCAAGGAAGAC TTCGAACTCGATAGCGGTTCGCTCTTCCGCAACGCCGACGGCTCCACTACCGGCATCACCTATCCGCTGCAGTCGTTCGA CAACCCGTACAACATCTGGACCGGCCCGCAGCACTATTTCCGCACCGGCCGCAGCAAGGGCAGCCTGACCAACCAGGCGG TGTACCTGTTCGACACGCTGCAGTTCAACGAGCAATGGATGCTCAACCTGGGCGGCCGCTACGAGCACAACGAAGGCGAC ACCACCACCTATACCGTCAACGCCACCGGCGGCATCACCGGCGTGGCCGCAGGCTTCCCGGCCGGCAGCAAGGACGATCT GTTTTCCTATCGCGCCGGACTGGTGTTCAAGCCGGTCGACAACGCCAGCCTGTATCTGTCCTATGCAAATGCGAAGACGC CATCGAAGGCCTCGGTCAACGGCTCGTGCACGCCGATTGCCACCTCCACCGTGGGTGCCAACTGCAATGTCGAACCGGAA ACCGCGGTCAATCTCGAACTGGGCGGCAAGTGGGATGTGTTGGACGAGCGCCTGGCGTTGACCGCCGCGGTGTTCCGCAA CGAACGCGAGAACTACAAGGTCAACAGCGGCGACCCGCTGGTCCCCGAGCAGGTACTGGACGGCAAGGCACGTGTGGACG GCATTGCGCTGGGCGCGGCCGGCTACCTGACCGAGCGCTGGTCCATCTTCGCCAACTACACCTTCCTGGACAGCGAAGTG CTGCAGAGCGTGTCCAATCGCACCGCCAGCCTGACAGGCGACCCCATCGCCGGGCGCGAACTGGTGCAGACACCGCGCAA CGCAGGCAATCTCTGGACCACCTACCAGCTCAACCAATGGACCTTCGGCTACGGCGTCAACTATCAGGGCAGCTTCTATC CGAACAACACCTCGACCGCGGTCTACCGCAAGACCGACGCCTATTGGGTGCATCGCGCCATGGTCGGCCTGCGCGTCAAT GCGTGGCTCAGCCTGCAGTTGAACGTCAACAACCTGTTCGACAAGGAGTACTACACCAGCATCCGCAACAACCTCACCGT CAACGCCGCAGGAACCGTCACGGCGGGCAGCGGTTGGGCGTTGCCGGGTGACGGCCGCTCGGCAGTGTTGAACGCCACCT TCAGCTTCTAA
Upstream 100 bases:
>100_bases GGCGACTGTCGGCGCAGCGCTTCGGGTTAGCCGGCGCAGCATCCACGCATTCCATCCCGCATCCGCCAAGCCATCGCCAG GTGGGAGCCTCGCATCCTCC
Downstream 100 bases:
>100_bases CCCTCAGGCACGCCGTGCGCGCTGCGCGGGCGACGTGGAGACCACTGCATGTTGTTGCCCATCCCCGATGTGCTCAGCCC CGCGCAACTCAGCCAGCTAC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]
Number of amino acids: Translated: 776; Mature: 776
Protein sequence:
>776_residues MRLSMTPSISPLASAVLLTLSAPAFAQPDDVSAPPGAVDLDAIRVQQERAQKPSSPKYTEALRDTPQTITVVTKQTMDQQ NLLSLRDVLSTLPGITFGAGEGGGGYGDSINLRGFTASSDITTDGVRDSAQYSRSDTFNLESVELINGANSAMSGAGSVG GNINLVTKSAGQGNFTNVMIGGGSDRYGRLTADSNYDFENGTAVRLNAMGHTQDVPGRDEEFRHRWGVAPSVAFGLGSDT RFTLSYLHQHDNNLPQYGVPFALSPFNDGPLPGVDRETYYGYRNVSRQEIDVDMLTGVLEMDFDDNVKLRSLARLQRVDQ STTATAPEGTWCLPNNTNAYTGRACVGQPPSTWNPNSGPRGLVRDTENFIAHSQTDLTATLHTGAIEHRVVAGVAFSKED FELDSGSLFRNADGSTTGITYPLQSFDNPYNIWTGPQHYFRTGRSKGSLTNQAVYLFDTLQFNEQWMLNLGGRYEHNEGD TTTYTVNATGGITGVAAGFPAGSKDDLFSYRAGLVFKPVDNASLYLSYANAKTPSKASVNGSCTPIATSTVGANCNVEPE TAVNLELGGKWDVLDERLALTAAVFRNERENYKVNSGDPLVPEQVLDGKARVDGIALGAAGYLTERWSIFANYTFLDSEV LQSVSNRTASLTGDPIAGRELVQTPRNAGNLWTTYQLNQWTFGYGVNYQGSFYPNNTSTAVYRKTDAYWVHRAMVGLRVN AWLSLQLNVNNLFDKEYYTSIRNNLTVNAAGTVTAGSGWALPGDGRSAVLNATFSF
Sequences:
>Translated_776_residues MRLSMTPSISPLASAVLLTLSAPAFAQPDDVSAPPGAVDLDAIRVQQERAQKPSSPKYTEALRDTPQTITVVTKQTMDQQ NLLSLRDVLSTLPGITFGAGEGGGGYGDSINLRGFTASSDITTDGVRDSAQYSRSDTFNLESVELINGANSAMSGAGSVG GNINLVTKSAGQGNFTNVMIGGGSDRYGRLTADSNYDFENGTAVRLNAMGHTQDVPGRDEEFRHRWGVAPSVAFGLGSDT RFTLSYLHQHDNNLPQYGVPFALSPFNDGPLPGVDRETYYGYRNVSRQEIDVDMLTGVLEMDFDDNVKLRSLARLQRVDQ STTATAPEGTWCLPNNTNAYTGRACVGQPPSTWNPNSGPRGLVRDTENFIAHSQTDLTATLHTGAIEHRVVAGVAFSKED FELDSGSLFRNADGSTTGITYPLQSFDNPYNIWTGPQHYFRTGRSKGSLTNQAVYLFDTLQFNEQWMLNLGGRYEHNEGD TTTYTVNATGGITGVAAGFPAGSKDDLFSYRAGLVFKPVDNASLYLSYANAKTPSKASVNGSCTPIATSTVGANCNVEPE TAVNLELGGKWDVLDERLALTAAVFRNERENYKVNSGDPLVPEQVLDGKARVDGIALGAAGYLTERWSIFANYTFLDSEV LQSVSNRTASLTGDPIAGRELVQTPRNAGNLWTTYQLNQWTFGYGVNYQGSFYPNNTSTAVYRKTDAYWVHRAMVGLRVN AWLSLQLNVNNLFDKEYYTSIRNNLTVNAAGTVTAGSGWALPGDGRSAVLNATFSF >Mature_776_residues MRLSMTPSISPLASAVLLTLSAPAFAQPDDVSAPPGAVDLDAIRVQQERAQKPSSPKYTEALRDTPQTITVVTKQTMDQQ NLLSLRDVLSTLPGITFGAGEGGGGYGDSINLRGFTASSDITTDGVRDSAQYSRSDTFNLESVELINGANSAMSGAGSVG GNINLVTKSAGQGNFTNVMIGGGSDRYGRLTADSNYDFENGTAVRLNAMGHTQDVPGRDEEFRHRWGVAPSVAFGLGSDT RFTLSYLHQHDNNLPQYGVPFALSPFNDGPLPGVDRETYYGYRNVSRQEIDVDMLTGVLEMDFDDNVKLRSLARLQRVDQ STTATAPEGTWCLPNNTNAYTGRACVGQPPSTWNPNSGPRGLVRDTENFIAHSQTDLTATLHTGAIEHRVVAGVAFSKED FELDSGSLFRNADGSTTGITYPLQSFDNPYNIWTGPQHYFRTGRSKGSLTNQAVYLFDTLQFNEQWMLNLGGRYEHNEGD TTTYTVNATGGITGVAAGFPAGSKDDLFSYRAGLVFKPVDNASLYLSYANAKTPSKASVNGSCTPIATSTVGANCNVEPE TAVNLELGGKWDVLDERLALTAAVFRNERENYKVNSGDPLVPEQVLDGKARVDGIALGAAGYLTERWSIFANYTFLDSEV LQSVSNRTASLTGDPIAGRELVQTPRNAGNLWTTYQLNQWTFGYGVNYQGSFYPNNTSTAVYRKTDAYWVHRAMVGLRVN AWLSLQLNVNNLFDKEYYTSIRNNLTVNAAGTVTAGSGWALPGDGRSAVLNATFSF
Specific function: Probably involved in iron transport [H]
COG id: COG4774
COG function: function code P; Outer membrane receptor for monomeric catechols
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=758, Percent_Identity=32.5857519788918, Blast_Score=292, Evalue=7e-80, Organism=Escherichia coli, GI1786344, Length=782, Percent_Identity=24.4245524296675, Blast_Score=126, Evalue=5e-30, Organism=Escherichia coli, GI1787344, Length=731, Percent_Identity=25.718194254446, Blast_Score=89, Evalue=8e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83930; Mature: 83930
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSMTPSISPLASAVLLTLSAPAFAQPDDVSAPPGAVDLDAIRVQQERAQKPSSPKYTE CCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH ALRDTPQTITVVTKQTMDQQNLLSLRDVLSTLPGITFGAGEGGGGYGDSINLRGFTASSD HHHCCCCEEEEEEHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEECCCC ITTDGVRDSAQYSRSDTFNLESVELINGANSAMSGAGSVGGNINLVTKSAGQGNFTNVMI CCCCCCCCCHHHCCCCCCCCCEEEEECCCCHHCCCCCCCCCEEEEEEECCCCCCCEEEEE GGGSDRYGRLTADSNYDFENGTAVRLNAMGHTQDVPGRDEEFRHRWGVAPSVAFGLGSDT CCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCC RFTLSYLHQHDNNLPQYGVPFALSPFNDGPLPGVDRETYYGYRNVSRQEIDVDMLTGVLE CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCHHHCCHHHHHCEEE MDFDDNVKLRSLARLQRVDQSTTATAPEGTWCLPNNTNAYTGRACVGQPPSTWNPNSGPR ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCC GLVRDTENFIAHSQTDLTATLHTGAIEHRVVAGVAFSKEDFELDSGSLFRNADGSTTGIT CCCCCCHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCEEE YPLQSFDNPYNIWTGPQHYFRTGRSKGSLTNQAVYLFDTLQFNEQWMLNLGGRYEHNEGD EEHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCEEEEECCCEEECCCCC TTTYTVNATGGITGVAAGFPAGSKDDLFSYRAGLVFKPVDNASLYLSYANAKTPSKASVN CEEEEEECCCCCEEEECCCCCCCCCCHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCCC GSCTPIATSTVGANCNVEPETAVNLELGGKWDVLDERLALTAAVFRNERENYKVNSGDPL CCCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCC VPEQVLDGKARVDGIALGAAGYLTERWSIFANYTFLDSEVLQSVSNRTASLTGDPIAGRE CCHHHHCCCCCCCEEEECCCHHHHHCEEEEEEEEEECHHHHHHHHCCCEECCCCCCCCHH LVQTPRNAGNLWTTYQLNQWTFGYGVNYQGSFYPNNTSTAVYRKTDAYWVHRAMVGLRVN HHHCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCEEEEEECCHHEEEHHHHEEEEE AWLSLQLNVNNLFDKEYYTSIRNNLTVNAAGTVTAGSGWALPGDGRSAVLNATFSF EEEEEEEEHHHHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure MRLSMTPSISPLASAVLLTLSAPAFAQPDDVSAPPGAVDLDAIRVQQERAQKPSSPKYTE CCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH ALRDTPQTITVVTKQTMDQQNLLSLRDVLSTLPGITFGAGEGGGGYGDSINLRGFTASSD HHHCCCCEEEEEEHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEECCCC ITTDGVRDSAQYSRSDTFNLESVELINGANSAMSGAGSVGGNINLVTKSAGQGNFTNVMI CCCCCCCCCHHHCCCCCCCCCEEEEECCCCHHCCCCCCCCCEEEEEEECCCCCCCEEEEE GGGSDRYGRLTADSNYDFENGTAVRLNAMGHTQDVPGRDEEFRHRWGVAPSVAFGLGSDT CCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCC RFTLSYLHQHDNNLPQYGVPFALSPFNDGPLPGVDRETYYGYRNVSRQEIDVDMLTGVLE CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCHHHCCHHHHHCEEE MDFDDNVKLRSLARLQRVDQSTTATAPEGTWCLPNNTNAYTGRACVGQPPSTWNPNSGPR ECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCC GLVRDTENFIAHSQTDLTATLHTGAIEHRVVAGVAFSKEDFELDSGSLFRNADGSTTGIT CCCCCCHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCEEE YPLQSFDNPYNIWTGPQHYFRTGRSKGSLTNQAVYLFDTLQFNEQWMLNLGGRYEHNEGD EEHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCEEEEECCCEEECCCCC TTTYTVNATGGITGVAAGFPAGSKDDLFSYRAGLVFKPVDNASLYLSYANAKTPSKASVN CEEEEEECCCCCEEEECCCCCCCCCCHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCCC GSCTPIATSTVGANCNVEPETAVNLELGGKWDVLDERLALTAAVFRNERENYKVNSGDPL CCCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCC VPEQVLDGKARVDGIALGAAGYLTERWSIFANYTFLDSEVLQSVSNRTASLTGDPIAGRE CCHHHHCCCCCCCEEEECCCHHHHHCEEEEEEEEEECHHHHHHHHCCCEECCCCCCCCHH LVQTPRNAGNLWTTYQLNQWTFGYGVNYQGSFYPNNTSTAVYRKTDAYWVHRAMVGLRVN HHHCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCEEEEEECCHHEEEHHHHEEEEE AWLSLQLNVNNLFDKEYYTSIRNNLTVNAAGTVTAGSGWALPGDGRSAVLNATFSF EEEEEEEEHHHHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12910271; 10079522 [H]