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The map label for this gene is yggS [C]

Identifier: 21243652

GI number: 21243652

Start: 3432390

End: 3433082

Strand: Direct

Name: yggS [C]

Synonym: XAC2925

Alternate gene names: 21243652

Gene position: 3432390-3433082 (Clockwise)

Preceding gene: 77748681

Following gene: 21243653

Centisome position: 66.32

GC content: 66.67

Gene sequence:

>693_bases
GTGCCGGCTTCGTCGCTGCAGCAGATTCTCGATGCCATCCACGCCGCAGCGGCCGCACACGCGCGTGCCGACGTGCGGCT
GCTGGCGGTCTCCAAGACCAAGCCGGCCGACGCCGTTGCCGCCCTGGCCGCGCAGGGCCAGCGCGCCTTTGGCGAAAACT
ACGTGCAGGAAGCCGACGCCAAGATCGCCCAGTTGCGTGCGTTGGACCTGGAATGGCATTTGATCGGCCACCTGCAATCC
AACAAGGCCGAACTGGCGAGCCAGTGCTTCGATTGGGTGCAGACGGTGGACCGCGCCAAATTGATTCCGCTGCTGGCGCG
TCACCGCCCGGACGACCGCGCACCGTTGAATGTATTGATCCAGGTCAACATCGACGACGAGGACAGCAAGCATGGATGCG
CGCCCGACGCGATCGACAGCCTGGCCGAAGCGATCGCCCTGCAACCACGCTTGCAGCTACGCGGACTCATGGCGATCCCT
GCCCCGTTCCCGGATCAGGCACGACGCCAGGCTGCGTTTTCGCGCATGCAGGCACTGTTCCGGCAGCTGCAAGCCCGTCA
TCGGCAGGTGGACACCTTGTCGATGGGCATGAGCTCGGATTTCGCCGAAGCGATCGCGGCCGGCGCCACCATGGTGCGGG
TGGGCACGGCGTTGTTCGGCGCGCGCGGTCAAGCGCCGGACGCCGCTGCCTGA

Upstream 100 bases:

>100_bases
CGCAGCACCGGCGCATCGATGCAGGCGTCCGGCAGCCCCCAACTGGATGGAAGCGTCTGCGGGCGGCACTATAGCGCTCC
CGCCTTCTCCGGAATGCCAC

Downstream 100 bases:

>100_bases
TCGCATCGCCTCCCACATCGACTCGTCTTACCAAGGTGCTGCAATGAACACACCGGCTTCGTCCTCGCCCTCGTCTTCCG
CTACGACGTCCATCGCCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPASSLQQILDAIHAAAAAHARADVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRALDLEWHLIGHLQS
NKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQVNIDDEDSKHGCAPDAIDSLAEAIALQPRLQLRGLMAIP
APFPDQARRQAAFSRMQALFRQLQARHRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGARGQAPDAAA

Sequences:

>Translated_230_residues
MPASSLQQILDAIHAAAAAHARADVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRALDLEWHLIGHLQS
NKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQVNIDDEDSKHGCAPDAIDSLAEAIALQPRLQLRGLMAIP
APFPDQARRQAAFSRMQALFRQLQARHRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGARGQAPDAAA
>Mature_229_residues
PASSLQQILDAIHAAAAAHARADVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRALDLEWHLIGHLQSN
KAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQVNIDDEDSKHGCAPDAIDSLAEAIALQPRLQLRGLMAIPA
PFPDQARRQAAFSRMQALFRQLQARHRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGARGQAPDAAA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=227, Percent_Identity=39.647577092511, Blast_Score=129, Evalue=3e-30,
Organism=Escherichia coli, GI1789321, Length=225, Percent_Identity=52, Blast_Score=214, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI17533025, Length=233, Percent_Identity=39.0557939914163, Blast_Score=134, Evalue=5e-32,
Organism=Saccharomyces cerevisiae, GI6319435, Length=234, Percent_Identity=34.1880341880342, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI45550861, Length=218, Percent_Identity=39.4495412844037, Blast_Score=125, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24733; Mature: 24602

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASSLQQILDAIHAAAAAHARADVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADA
CCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHH
KIAQLRALDLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLI
HHHHHHHHCCHHHEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
QVNIDDEDSKHGCAPDAIDSLAEAIALQPRLQLRGLMAIPAPFPDQARRQAAFSRMQALF
EEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCCCCHHHHHHHHHHHHHHHH
RQLQARHRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGARGQAPDAAA
HHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PASSLQQILDAIHAAAAAHARADVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADA
CHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHH
KIAQLRALDLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLI
HHHHHHHHCCHHHEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
QVNIDDEDSKHGCAPDAIDSLAEAIALQPRLQLRGLMAIPAPFPDQARRQAAFSRMQALF
EEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCCCCHHHHHHHHHHHHHHHH
RQLQARHRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGARGQAPDAAA
HHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]