Click here to switch to the map view.

The map label for this gene is int

Identifier: 21243631

GI number: 21243631

Start: 3409969

End: 3411288

Strand: Reverse

Name: int

Synonym: XAC2904

Alternate gene names: NA

Gene position: 3411288-3409969 (Counterclockwise)

Preceding gene: 21243632

Following gene: 21243630

Centisome position: 65.91

GC content: 59.02

Gene sequence:

>1320_bases
ATGCTGTCAGTTCATGTGCTTGGCGAAGGGGAGCGAGTCCCAATGCTCCATGATGAGCAGGGCATGCCTTTGTTCTATCC
GACCCTGTTCGCTACTTCCCAGCTTCGGAATGCAGGGGCGGCCGTAAACACGATCCGGAACAAGCTTGCCGATCTCCTCG
TGCTCTTGCGCTGGGAGCAGGCCAATGGCCGAGACCTGATTACAGAGTTCCGCAGCGGACGCTTTCTCTCGGTTGCAGAC
ATAGTTTCGCTGCGGGATTTCGCCAAGCTCGACATGCGGGAGTTGAGTTCTGCTGGAGACGGTGAAAAGGAACGGGGCGT
CGTCGTAGATTTCCTTGAGGCGCGAGTTTCCTCAAGTCGGGCTCTGGCCACCATTGGTGGGCAGCAACACTTCAATCGGA
TCAGCACGTTCGCCGACTATCTGGAATTTACGGCTTCAGTCGTTACACAGCATCAGAACCCGTCACGGACCGCGCAGGAA
ATCGCGCGGATGGCCAGGACCATCCGTAAACATCGGCCCCGCGGGTTGGCAAAGCAGAGGGCCGACGAATCGGATCTGCG
CTCCCCCCCTTCTGAGTTGGTTGAGCGATTCATGGCGATAGGTGCCGAGGGAAACCCGCGAAACCCGTTCCGGCACCCGG
AAGTCCAACTGCGAAATGCTATTATCTTCGGGCTGCTGCGGCACACCGGAATGCGGCGAGGGGAGCTATTGAGTCTGCGG
CTCGATCAATTCGATTTGGGCCATGAGCCGCACGTCTGGGTTCGGCGCAATCAGGACGATAAGCATGACTCGCGGCGCTA
TCAGCCGGTAGCCAAGACCAAGGAGCGTCCGCTGCCGCTGCCTGAGATGCTAGCCAACCAGATCGACCGTTACATGTTGA
AGGTGCGCCCCAAGATCGGCCCCGCCAGACGGCACCCCTACCTGCTTGTCTCGCACAGGAAGGGCAGCACATGGGGTAAG
CCGCTCTCCGCCTCAGCACTAAGCAGTCAGATCTTTTCCCGGATGCGCGCGGTTGACTCCGCCTTCGAGGCTATCCATCC
CCATGCCTTTCGACACCACTTCAACTACGAGCTTTCCGTCAGCATTGACAAGCACAACGCCAAGAGCCGGTCAGGGGAAG
ATGCTGAGGCGTCACCGATCAGTGAGGCTAAGGAACTGGATGTTCGTGCGTTCCTGAATGGTCATCGCAGCAAGACCTCG
GGAGCGACGTACAACCGGCGCCACATCCGTGAAGCCAGCGACAAGGCTGCTCGTCGGGTGCAGGCAGGTCGTCCCAAGAC
CAGCGATAACTCTAAGGAAGACGGCGATGGTCCGCGTTAA

Upstream 100 bases:

>100_bases
CCGTTTTTACGGGGCTTTCTGTTTTTCAATGGTTCTTGCACTGTTGAGAATTTCATATATAGTTGTGTGCATGGGGAAAA
AGTAAAAAAAGGCGATGCCC

Downstream 100 bases:

>100_bases
GCCAAAGCAGGTCGATGCCGAGCGGAAGTCGATAGCTCGAGCAGTGTCTAAGGACGGTTATCCATTTGAACCTACGGATG
ACCACTGGCGATTGAATAAG

Product: integrase/recombinase

Products: NA

Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Site-Specific Recombinase Phage Integrase Family; Integrase/Recombinase; Site Specific Recombinase; Integrase; Tyrosine Recombinase XerD; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MLSVHVLGEGERVPMLHDEQGMPLFYPTLFATSQLRNAGAAVNTIRNKLADLLVLLRWEQANGRDLITEFRSGRFLSVAD
IVSLRDFAKLDMRELSSAGDGEKERGVVVDFLEARVSSSRALATIGGQQHFNRISTFADYLEFTASVVTQHQNPSRTAQE
IARMARTIRKHRPRGLAKQRADESDLRSPPSELVERFMAIGAEGNPRNPFRHPEVQLRNAIIFGLLRHTGMRRGELLSLR
LDQFDLGHEPHVWVRRNQDDKHDSRRYQPVAKTKERPLPLPEMLANQIDRYMLKVRPKIGPARRHPYLLVSHRKGSTWGK
PLSASALSSQIFSRMRAVDSAFEAIHPHAFRHHFNYELSVSIDKHNAKSRSGEDAEASPISEAKELDVRAFLNGHRSKTS
GATYNRRHIREASDKAARRVQAGRPKTSDNSKEDGDGPR

Sequences:

>Translated_439_residues
MLSVHVLGEGERVPMLHDEQGMPLFYPTLFATSQLRNAGAAVNTIRNKLADLLVLLRWEQANGRDLITEFRSGRFLSVAD
IVSLRDFAKLDMRELSSAGDGEKERGVVVDFLEARVSSSRALATIGGQQHFNRISTFADYLEFTASVVTQHQNPSRTAQE
IARMARTIRKHRPRGLAKQRADESDLRSPPSELVERFMAIGAEGNPRNPFRHPEVQLRNAIIFGLLRHTGMRRGELLSLR
LDQFDLGHEPHVWVRRNQDDKHDSRRYQPVAKTKERPLPLPEMLANQIDRYMLKVRPKIGPARRHPYLLVSHRKGSTWGK
PLSASALSSQIFSRMRAVDSAFEAIHPHAFRHHFNYELSVSIDKHNAKSRSGEDAEASPISEAKELDVRAFLNGHRSKTS
GATYNRRHIREASDKAARRVQAGRPKTSDNSKEDGDGPR
>Mature_439_residues
MLSVHVLGEGERVPMLHDEQGMPLFYPTLFATSQLRNAGAAVNTIRNKLADLLVLLRWEQANGRDLITEFRSGRFLSVAD
IVSLRDFAKLDMRELSSAGDGEKERGVVVDFLEARVSSSRALATIGGQQHFNRISTFADYLEFTASVVTQHQNPSRTAQE
IARMARTIRKHRPRGLAKQRADESDLRSPPSELVERFMAIGAEGNPRNPFRHPEVQLRNAIIFGLLRHTGMRRGELLSLR
LDQFDLGHEPHVWVRRNQDDKHDSRRYQPVAKTKERPLPLPEMLANQIDRYMLKVRPKIGPARRHPYLLVSHRKGSTWGK
PLSASALSSQIFSRMRAVDSAFEAIHPHAFRHHFNYELSVSIDKHNAKSRSGEDAEASPISEAKELDVRAFLNGHRSKTS
GATYNRRHIREASDKAARRVQAGRPKTSDNSKEDGDGPR

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49682; Mature: 49682

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVHVLGEGERVPMLHDEQGMPLFYPTLFATSQLRNAGAAVNTIRNKLADLLVLLRWEQ
CEEEEEECCCCCCCCEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ANGRDLITEFRSGRFLSVADIVSLRDFAKLDMRELSSAGDGEKERGVVVDFLEARVSSSR
CCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
ALATIGGQQHFNRISTFADYLEFTASVVTQHQNPSRTAQEIARMARTIRKHRPRGLAKQR
CEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHC
ADESDLRSPPSELVERFMAIGAEGNPRNPFRHPEVQLRNAIIFGLLRHTGMRRGELLSLR
CCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
LDQFDLGHEPHVWVRRNQDDKHDSRRYQPVAKTKERPLPLPEMLANQIDRYMLKVRPKIG
ECHHCCCCCCCEEEECCCCCCHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
PARRHPYLLVSHRKGSTWGKPLSASALSSQIFSRMRAVDSAFEAIHPHAFRHHFNYELSV
CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEE
SIDKHNAKSRSGEDAEASPISEAKELDVRAFLNGHRSKTSGATYNRRHIREASDKAARRV
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QAGRPKTSDNSKEDGDGPR
HCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSVHVLGEGERVPMLHDEQGMPLFYPTLFATSQLRNAGAAVNTIRNKLADLLVLLRWEQ
CEEEEEECCCCCCCCEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ANGRDLITEFRSGRFLSVADIVSLRDFAKLDMRELSSAGDGEKERGVVVDFLEARVSSSR
CCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
ALATIGGQQHFNRISTFADYLEFTASVVTQHQNPSRTAQEIARMARTIRKHRPRGLAKQR
CEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHC
ADESDLRSPPSELVERFMAIGAEGNPRNPFRHPEVQLRNAIIFGLLRHTGMRRGELLSLR
CCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
LDQFDLGHEPHVWVRRNQDDKHDSRRYQPVAKTKERPLPLPEMLANQIDRYMLKVRPKIG
ECHHCCCCCCCEEEECCCCCCHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
PARRHPYLLVSHRKGSTWGKPLSASALSSQIFSRMRAVDSAFEAIHPHAFRHHFNYELSV
CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEE
SIDKHNAKSRSGEDAEASPISEAKELDVRAFLNGHRSKTSGATYNRRHIREASDKAARRV
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
QAGRPKTSDNSKEDGDGPR
HCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA