| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is phuR [C]
Identifier: 21243556
GI number: 21243556
Start: 3314256
End: 3316319
Strand: Direct
Name: phuR [C]
Synonym: XAC2829
Alternate gene names: 21243556
Gene position: 3314256-3316319 (Clockwise)
Preceding gene: 21243553
Following gene: 21243557
Centisome position: 64.04
GC content: 65.12
Gene sequence:
>2064_bases ATGCCCCCTTTTGCACACCCGTTCCGTCGTTCCGCGCTCTCGCTGGCCCTGGCCAGCCTGCTGACCCCTGCCCTGGCCAT GGCCGAGGACGCTCCGGTCGCTGCCGATGGGCAGACCCCGCCCAGTTCGGACACACGCCACGATGCCAGCCCCTCCAGTG GGCGCCATATCAAGGATCTGGACAAGGTGGTGGTCACCGCCAGCCCGTTGCGCGATGCGGCCGGTGAGTTGAGCCGCCCG GTGGAAGTGCTGGCCGGCGAGCGTCTGGACGAGGTGCGCAGTTCCAGCCTGGGCGAAACCGTGGCCAGCCTGCCCGGCGT ACAGAGTTCCAACTTCGGGCCCGGCGTGGGCCGGCCGATCATCCGCGGCCTGGACGGCCCGCGCGTGGCAGTGCTGCGCG ACGGCCTGTCGACCCAAGACGTGTCCACCGTCAGCCAGGACCATTCCCCGGCAATCGAGCCGTTCCTGGCCAACCAGATC GAAGTGCTGAAGGGTCCATCGACGCTGCTGTACGGCTCCGGCGCCATCGGCGGCGTGGTCAACGTGGTCGACGGGCGCAT CGCCGAGACCCCGGTGGACGGCTTCAGCGGCCGCGCCGAAGTACGCTTCGACGGCGGCGACAAGGACGGCAACACCGACA TGTTCCGCGTCGATGCCGGCAATGGCAGCGGGCTGTCGATCCACGCAGATGGCGTGTATCGCAACCAGAACGACTACGAC ACGCCGAAGGGCCGCCAGCTCAACAGCTGGGTCGATTCCAAGGTGGGCTCGATCGGTGCGTCGCTGTCCGGCGATTGGGG TTTCGTGGGTTTGTCGGCATCGCGTTTCCGCGATAACTACGGCAACCCGGGCGAGCCGGGCGACCCGTCCATCGGCGAGC GCGGGGTGTCGCTGAAGTTGCAGCAGGACCGCTACGACCTCAAGGGCGGGCTGACCGATCCGTGGGGCGAAGGCAGCGCG CTGCGTTACAGCTTCGGCCATACCGATTACGCGCATACCGAATTCGAAGGCGCCGAAGTCGGCACCGTGTTCACCAAGCG GGCCAACGAAGGCCGCGTGGAAGCCTCGTTTACGTTTGGTGGCGGCTGGCAGACTGCATTCGGCCTGCAGGGCAGCGACA GCACCTTTCAGGCGATCGGCGAAGAATCCTTCGTGCCCAAGACCGATACACGCTCGCTCGGCGCATTCGCCGTTGCACGC AATAGTTGGGAGCGCGTCACCGCCGAAGTCGGCGCGCGCGTGGACAAGGTCAAGTACCAGACCGATATCGGCGTGGACCG TGATTTCACTCCGACCAGCTTCTCGGCCAGCGGCGGTTTCCGCTTCAACGAACAATGGCGTCTGACCGCCAACCTGGACC ACGCCGAGCGTGCGCCGGCCGAAGAAGAACTGTTCGCCAACGGCCCGCATATCGCCACCCTCGCCTTCGAAATCGGCGAT GCCAATCTGAAGACCGAGAAGGCCAACCAGGCCGAGCTGGGCTTGAATTTCCAGAACGAATGGGTGGATGCCAAGGTGGC GGCGTACTACAACCGCTACAACGACTTCGTCTACATCGTCGACACCGGCGGCCAGTGGTTCAACGAAGAAGACAACGACT TCCTGCCGATCCGCCAGTGGACGCAGGCCGATGCGATCTTCCACGGTTTCGAAGGCGAGGCCACCTTCCACCTGGCCAAC AACGATAACGGTGCGTGGGACCTGCGCGTGTTCGGCGATACGGTGCGTGCGCGTCTGAACGATGGCGGCAACCTGCCGCG TATCGCACCGGGACGTTTCGGTGCGCAGCTGCGCTGGGATGCCGACCAGTGGCGCGCATCGCTTGGTGCCACCCGCACCC TGAAGCAGGACAAGGTGGCAGTGAACGAAACCCCGACCGACGGCTACACCTTCGTCGATGCGCATCTGGCGTATCACGTG GACCACGGCAGCGCCGCGTGGGAAGTGTTCCTGGACGGCAATAACCTGACCAATCAGGACGCACGCGTGCACACCTCCTT CCTCAAGGACGATGTGATGCTTCCTGGCCGCAGCGCTTCGTTCGGCGTGCGCTTGTTCTTCTGA
Upstream 100 bases:
>100_bases CATCGATGCATCGCGCAGTCATGCGGGTTCGCCGCCGGCGCAGTAGGCAAGCTGCGCCTCACCACTGATACACAGTAACA ATTACAGAGTCCGGCCCACC
Downstream 100 bases:
>100_bases CAGCAGTCTCTCTCCCCTGCTGAGTGGAAGGAAGGCCGCCTTCGGGCGGCCTTTTTGTGTGCGTTGCCGACCTATCAGCG CCTCCTGCGGAGTGCTGCAC
Product: outer membrane hemin receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 687; Mature: 686
Protein sequence:
>687_residues MPPFAHPFRRSALSLALASLLTPALAMAEDAPVAADGQTPPSSDTRHDASPSSGRHIKDLDKVVVTASPLRDAAGELSRP VEVLAGERLDEVRSSSLGETVASLPGVQSSNFGPGVGRPIIRGLDGPRVAVLRDGLSTQDVSTVSQDHSPAIEPFLANQI EVLKGPSTLLYGSGAIGGVVNVVDGRIAETPVDGFSGRAEVRFDGGDKDGNTDMFRVDAGNGSGLSIHADGVYRNQNDYD TPKGRQLNSWVDSKVGSIGASLSGDWGFVGLSASRFRDNYGNPGEPGDPSIGERGVSLKLQQDRYDLKGGLTDPWGEGSA LRYSFGHTDYAHTEFEGAEVGTVFTKRANEGRVEASFTFGGGWQTAFGLQGSDSTFQAIGEESFVPKTDTRSLGAFAVAR NSWERVTAEVGARVDKVKYQTDIGVDRDFTPTSFSASGGFRFNEQWRLTANLDHAERAPAEEELFANGPHIATLAFEIGD ANLKTEKANQAELGLNFQNEWVDAKVAAYYNRYNDFVYIVDTGGQWFNEEDNDFLPIRQWTQADAIFHGFEGEATFHLAN NDNGAWDLRVFGDTVRARLNDGGNLPRIAPGRFGAQLRWDADQWRASLGATRTLKQDKVAVNETPTDGYTFVDAHLAYHV DHGSAAWEVFLDGNNLTNQDARVHTSFLKDDVMLPGRSASFGVRLFF
Sequences:
>Translated_687_residues MPPFAHPFRRSALSLALASLLTPALAMAEDAPVAADGQTPPSSDTRHDASPSSGRHIKDLDKVVVTASPLRDAAGELSRP VEVLAGERLDEVRSSSLGETVASLPGVQSSNFGPGVGRPIIRGLDGPRVAVLRDGLSTQDVSTVSQDHSPAIEPFLANQI EVLKGPSTLLYGSGAIGGVVNVVDGRIAETPVDGFSGRAEVRFDGGDKDGNTDMFRVDAGNGSGLSIHADGVYRNQNDYD TPKGRQLNSWVDSKVGSIGASLSGDWGFVGLSASRFRDNYGNPGEPGDPSIGERGVSLKLQQDRYDLKGGLTDPWGEGSA LRYSFGHTDYAHTEFEGAEVGTVFTKRANEGRVEASFTFGGGWQTAFGLQGSDSTFQAIGEESFVPKTDTRSLGAFAVAR NSWERVTAEVGARVDKVKYQTDIGVDRDFTPTSFSASGGFRFNEQWRLTANLDHAERAPAEEELFANGPHIATLAFEIGD ANLKTEKANQAELGLNFQNEWVDAKVAAYYNRYNDFVYIVDTGGQWFNEEDNDFLPIRQWTQADAIFHGFEGEATFHLAN NDNGAWDLRVFGDTVRARLNDGGNLPRIAPGRFGAQLRWDADQWRASLGATRTLKQDKVAVNETPTDGYTFVDAHLAYHV DHGSAAWEVFLDGNNLTNQDARVHTSFLKDDVMLPGRSASFGVRLFF >Mature_686_residues PPFAHPFRRSALSLALASLLTPALAMAEDAPVAADGQTPPSSDTRHDASPSSGRHIKDLDKVVVTASPLRDAAGELSRPV EVLAGERLDEVRSSSLGETVASLPGVQSSNFGPGVGRPIIRGLDGPRVAVLRDGLSTQDVSTVSQDHSPAIEPFLANQIE VLKGPSTLLYGSGAIGGVVNVVDGRIAETPVDGFSGRAEVRFDGGDKDGNTDMFRVDAGNGSGLSIHADGVYRNQNDYDT PKGRQLNSWVDSKVGSIGASLSGDWGFVGLSASRFRDNYGNPGEPGDPSIGERGVSLKLQQDRYDLKGGLTDPWGEGSAL RYSFGHTDYAHTEFEGAEVGTVFTKRANEGRVEASFTFGGGWQTAFGLQGSDSTFQAIGEESFVPKTDTRSLGAFAVARN SWERVTAEVGARVDKVKYQTDIGVDRDFTPTSFSASGGFRFNEQWRLTANLDHAERAPAEEELFANGPHIATLAFEIGDA NLKTEKANQAELGLNFQNEWVDAKVAAYYNRYNDFVYIVDTGGQWFNEEDNDFLPIRQWTQADAIFHGFEGEATFHLANN DNGAWDLRVFGDTVRARLNDGGNLPRIAPGRFGAQLRWDADQWRASLGATRTLKQDKVAVNETPTDGYTFVDAHLAYHVD HGSAAWEVFLDGNNLTNQDARVHTSFLKDDVMLPGRSASFGVRLFF
Specific function: Probable receptor, tonB-dependent [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=492, Percent_Identity=23.9837398373984, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1788478, Length=187, Percent_Identity=27.807486631016, Blast_Score=66, Evalue=9e-12,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 74281; Mature: 74150
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPFAHPFRRSALSLALASLLTPALAMAEDAPVAADGQTPPSSDTRHDASPSSGRHIKDL CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH DKVVVTASPLRDAAGELSRPVEVLAGERLDEVRSSSLGETVASLPGVQSSNFGPGVGRPI HHEEEECCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH IRGLDGPRVAVLRDGLSTQDVSTVSQDHSPAIEPFLANQIEVLKGPSTLLYGSGAIGGVV HHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHCCCEEECCCCEEEECCCCCCCEE NVVDGRIAETPVDGFSGRAEVRFDGGDKDGNTDMFRVDAGNGSGLSIHADGVYRNQNDYD ECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCEEECCCCCC TPKGRQLNSWVDSKVGSIGASLSGDWGFVGLSASRFRDNYGNPGEPGDPSIGERGVSLKL CCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCEEEE QQDRYDLKGGLTDPWGEGSALRYSFGHTDYAHTEFEGAEVGTVFTKRANEGRVEASFTFG CCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECEEEEECCCCCEEEEEEEEC GGWQTAFGLQGSDSTFQAIGEESFVPKTDTRSLGAFAVARNSWERVTAEVGARVDKVKYQ CCCCEEECCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEHHCCHHHHHHHHCCHHHHEEEE TDIGVDRDFTPTSFSASGGFRFNEQWRLTANLDHAERAPAEEELFANGPHIATLAFEIGD ECCCCCCCCCCCCCCCCCCCEECCEEEEEECCCHHHCCCCHHHHHCCCCEEEEEEEEECC ANLKTEKANQAELGLNFQNEWVDAKVAAYYNRYNDFVYIVDTGGQWFNEEDNDFLPIRQW CCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCHHH TQADAIFHGFEGEATFHLANNDNGAWDLRVFGDTVRARLNDGGNLPRIAPGRFGAQLRWD CCHHHEEECCCCCEEEEEECCCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEEC ADQWRASLGATRTLKQDKVAVNETPTDGYTFVDAHLAYHVDHGSAAWEVFLDGNNLTNQD HHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEEEEEEEECCCEEEEEEECCCCCCCCC ARVHTSFLKDDVMLPGRSASFGVRLFF HHHHHHHHHCCCCCCCCCCCCCEEEEC >Mature Secondary Structure PPFAHPFRRSALSLALASLLTPALAMAEDAPVAADGQTPPSSDTRHDASPSSGRHIKDL CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH DKVVVTASPLRDAAGELSRPVEVLAGERLDEVRSSSLGETVASLPGVQSSNFGPGVGRPI HHEEEECCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH IRGLDGPRVAVLRDGLSTQDVSTVSQDHSPAIEPFLANQIEVLKGPSTLLYGSGAIGGVV HHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHCCCEEECCCCEEEECCCCCCCEE NVVDGRIAETPVDGFSGRAEVRFDGGDKDGNTDMFRVDAGNGSGLSIHADGVYRNQNDYD ECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCEEECCCCCC TPKGRQLNSWVDSKVGSIGASLSGDWGFVGLSASRFRDNYGNPGEPGDPSIGERGVSLKL CCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCEEEE QQDRYDLKGGLTDPWGEGSALRYSFGHTDYAHTEFEGAEVGTVFTKRANEGRVEASFTFG CCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECEEEEECCCCCEEEEEEEEC GGWQTAFGLQGSDSTFQAIGEESFVPKTDTRSLGAFAVARNSWERVTAEVGARVDKVKYQ CCCCEEECCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEHHCCHHHHHHHHCCHHHHEEEE TDIGVDRDFTPTSFSASGGFRFNEQWRLTANLDHAERAPAEEELFANGPHIATLAFEIGD ECCCCCCCCCCCCCCCCCCCEECCEEEEEECCCHHHCCCCHHHHHCCCCEEEEEEEEECC ANLKTEKANQAELGLNFQNEWVDAKVAAYYNRYNDFVYIVDTGGQWFNEEDNDFLPIRQW CCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCHHH TQADAIFHGFEGEATFHLANNDNGAWDLRVFGDTVRARLNDGGNLPRIAPGRFGAQLRWD CCHHHEEECCCCCEEEEEECCCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEEC ADQWRASLGATRTLKQDKVAVNETPTDGYTFVDAHLAYHVDHGSAAWEVFLDGNNLTNQD HHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEEEEEEEECCCEEEEEEECCCCCCCCC ARVHTSFLKDDVMLPGRSASFGVRLFF HHHHHHHHHCCCCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]