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The map label for this gene is rfaY

Identifier: 21243541

GI number: 21243541

Start: 3302023

End: 3302520

Strand: Direct

Name: rfaY

Synonym: XAC2814

Alternate gene names: NA

Gene position: 3302023-3302520 (Clockwise)

Preceding gene: 21243536

Following gene: 77748674

Centisome position: 63.8

GC content: 65.26

Gene sequence:

>498_bases
ATGCCCCTGGACACAGATCTGCACACCCGCTTCAGCGCCCTGCTGCAGCAGCATCGCGCCATCGTGCTGAAGGTGGCGGC
CAGCTATTGCCGCGACCGCGACGACCGCGACGAACTGGCGCAGGAAATCGCTACGCAATTGTGGCGGGCATTTCCCGGCT
ACGACCCGAGTCGGCGCTTTTCCACCTGGATGTACCGCATCGCCCTGAACGTGGCGATCAGCGATCTGCGCGGCCGCCGC
GCGGCCGGCGAGCCGATCGCGCTGGACGCGGTGGTGGAGCGCATCGCCGATCCATGCGCACACGACCCTGTACGCGAGCA
ACAGGTGGCCGCGCTGTATGCCTTCATCGCACACCAACTGCCGCTGGAACGCGCGCTGCTGTTGCTCTATCTGGACCAAC
ACAGCTATCGCGAGATCGCCGACGTGCTCGGCATCAGCGAAACCAATGTCGCCACCAAACTCAGCCGCCTGAAATCGCGC
ATCCGCGCCGAGCTGTGA

Upstream 100 bases:

>100_bases
CTTGCTGTCGAAATTTTCGTGACAGTCCATTCAGGTTGTGAGGAATCGCGCTCCTGCGCGAATCATCCCGTGTCGTCCCT
TCACCTGCCCGACCGGAGCC

Downstream 100 bases:

>100_bases
ACCCCACCAATCCGCAACCGGAGCAAGACATGGAACTGGACGACATCGCCGTGGCCTGGCGTTCGCTGGAACAACGGCTG
GATCAACACGCCGCACTCGC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Family RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Factor; RNA Polymerase Ecf-Type Sigma Factor; Membrane-Anchored Sigma Factor; RNA Polymerase Sigma-70 Factor

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MPLDTDLHTRFSALLQQHRAIVLKVAASYCRDRDDRDELAQEIATQLWRAFPGYDPSRRFSTWMYRIALNVAISDLRGRR
AAGEPIALDAVVERIADPCAHDPVREQQVAALYAFIAHQLPLERALLLLYLDQHSYREIADVLGISETNVATKLSRLKSR
IRAEL

Sequences:

>Translated_165_residues
MPLDTDLHTRFSALLQQHRAIVLKVAASYCRDRDDRDELAQEIATQLWRAFPGYDPSRRFSTWMYRIALNVAISDLRGRR
AAGEPIALDAVVERIADPCAHDPVREQQVAALYAFIAHQLPLERALLLLYLDQHSYREIADVLGISETNVATKLSRLKSR
IRAEL
>Mature_164_residues
PLDTDLHTRFSALLQQHRAIVLKVAASYCRDRDDRDELAQEIATQLWRAFPGYDPSRRFSTWMYRIALNVAISDLRGRRA
AGEPIALDAVVERIADPCAHDPVREQQVAALYAFIAHQLPLERALLLLYLDQHSYREIADVLGISETNVATKLSRLKSRI
RAEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18823; Mature: 18692

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLDTDLHTRFSALLQQHRAIVLKVAASYCRDRDDRDELAQEIATQLWRAFPGYDPSRRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
STWMYRIALNVAISDLRGRRAAGEPIALDAVVERIADPCAHDPVREQQVAALYAFIAHQL
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
PLERALLLLYLDQHSYREIADVLGISETNVATKLSRLKSRIRAEL
CHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLDTDLHTRFSALLQQHRAIVLKVAASYCRDRDDRDELAQEIATQLWRAFPGYDPSRRF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
STWMYRIALNVAISDLRGRRAAGEPIALDAVVERIADPCAHDPVREQQVAALYAFIAHQL
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
PLERALLLLYLDQHSYREIADVLGISETNVATKLSRLKSRIRAEL
CHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA