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The map label for this gene is rbfA

Identifier: 21243415

GI number: 21243415

Start: 3144664

End: 3145056

Strand: Reverse

Name: rbfA

Synonym: XAC2686

Alternate gene names: 21243415

Gene position: 3145056-3144664 (Counterclockwise)

Preceding gene: 21243416

Following gene: 21243414

Centisome position: 60.77

GC content: 64.63

Gene sequence:

>393_bases
ATGCCAACCAAATCATTCCATCGCACCGACCGCGTATCTGCGCAGGTGCGTCGCGACCTCGGCACGATCGTGCACGCGGC
CGTGCGCGACAATGGCCTGCCGTCGGTCAGCGTGTCCGACGTCGAAATCAGTCGCGACCTGGCGCACGCCAAGGTCTTCG
TCACCGCGCTGCAGCAGGAGCGTTCGGCCGAAGCGGTCAAGGGGCTCAAGGAAATCGCCGGCCAGCTGCGTACGCAGTTG
GCGCGCGCGATGAAGCTGCGCCACGTACCCGAGCTGCACTTCCATTACGACGATTCGGTCGATCGCGGCGAACGCATCGA
CAATCTGCTGCGTGACCTTGACGACGTTGGCCCCGAGGCCACGTCCAGCGACGAAGATGCCGAACAGCGCTGA

Upstream 100 bases:

>100_bases
TGTCCAGTGCAGGTTCTGCAAGGCGAGGGCGGCATGGCCGCCCGCGTTTGTTTTTGGCTTCGGTGCCTACTGGCCCTCCG
AATCAACCAGGTCCACGACC

Downstream 100 bases:

>100_bases
GCGCTGTCACGGCCTGCCGCTTCTGCCGCGGCCCTGATTCCCGCGGGCGCGCACTGCGCCTGATTCGAGCACCGATCCTT
TGAAACCCCGCATCGTCTAC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MPTKSFHRTDRVSAQVRRDLGTIVHAAVRDNGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRTQL
ARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEATSSDEDAEQR

Sequences:

>Translated_130_residues
MPTKSFHRTDRVSAQVRRDLGTIVHAAVRDNGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRTQL
ARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEATSSDEDAEQR
>Mature_129_residues
PTKSFHRTDRVSAQVRRDLGTIVHAAVRDNGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRTQLA
RAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEATSSDEDAEQR

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=111, Percent_Identity=40.5405405405405, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_XANAC (Q8PJ56)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_642997.1
- ProteinModelPortal:   Q8PJ56
- SMR:   Q8PJ56
- GeneID:   1156757
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC2686
- NMPDR:   fig|190486.1.peg.2641
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   XAXO190486:XAC2686-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14537; Mature: 14406

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTKSFHRTDRVSAQVRRDLGTIVHAAVRDNGLPSVSVSDVEISRDLAHAKVFVTALQQE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RSAEAVKGLKEIAGQLRTQLARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
TSSDEDAEQR
CCCCCCCCCC
>Mature Secondary Structure 
PTKSFHRTDRVSAQVRRDLGTIVHAAVRDNGLPSVSVSDVEISRDLAHAKVFVTALQQE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RSAEAVKGLKEIAGQLRTQLARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDVGPEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
TSSDEDAEQR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217