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The map label for this gene is sodB [H]

Identifier: 21243406

GI number: 21243406

Start: 3136043

End: 3136621

Strand: Direct

Name: sodB [H]

Synonym: XAC2677

Alternate gene names: 21243406

Gene position: 3136043-3136621 (Clockwise)

Preceding gene: 21243402

Following gene: 21243409

Centisome position: 60.59

GC content: 63.56

Gene sequence:

>579_bases
ATGCCGATCGAACACGTTGCACTGCCCTACTCCCGCGCTGCCCTGGAACCGCATCTTTCGTCTGCGACACTGGAAGCGCA
TCACGGCGTCTGTCACCGCAGCGAGGTCGAACAGCTCAACGCGCGCCTGGAAGGCAGCGAATTAGCCGAGCTGACGCTGG
AAGAAATCATCGCCCAGGCGCAGGGCACGTTGTTTCATCTCGCCGCGCAGGTGTGGAACCACAATTTCTATTGGCAGTGC
CTGCGTCCGCGCGCTGGCGGGGAGCCGCTTGGGCGGCTGGGCGAGGGCATCGCCAAATCGTTCGGCGACTTCGTGCATTT
CAAGCAGGAGTTCAATCGTGTGGCCTTGACCAGCTTCGGCTCGGGCTGGGTGTGGCTGGTGCAGCGCCCGGACGGCGCGT
TGGCGGTGGTCGCCACACCCAATGCCTCCACCCCGCTCACCGGGCCGGACGTTCCGCTGCTCGCCTGCGACATCTGGGAG
CATGCGTATTACCTTGACTACCAGCAGGATCGCGCGCGCTACCTGGAGGCTTTCTGGAAGCTGGTGAACTGGGATTTTGT
CGCAAGCCGACTGGGCTGA

Upstream 100 bases:

>100_bases
GGCAGGCCCGACCGCCGGGTCGGATAGACTTCCGCAAAGGCGCGCATTGTAAGCCTTCAGCGCGACCTATCGCCGCACTC
CCTTCGCTGCCACTGACATC

Downstream 100 bases:

>100_bases
CCTGCCCGCTCAGCTTTCAGTCGCAGATGCAGACTGGCTCATCTGCTGAAACATTGCAGGACGGGTCCGCGTCCGACACC
GACTTGCCTCGCAGACGGCG

Product: iron superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MPIEHVALPYSRAALEPHLSSATLEAHHGVCHRSEVEQLNARLEGSELAELTLEEIIAQAQGTLFHLAAQVWNHNFYWQC
LRPRAGGEPLGRLGEGIAKSFGDFVHFKQEFNRVALTSFGSGWVWLVQRPDGALAVVATPNASTPLTGPDVPLLACDIWE
HAYYLDYQQDRARYLEAFWKLVNWDFVASRLG

Sequences:

>Translated_192_residues
MPIEHVALPYSRAALEPHLSSATLEAHHGVCHRSEVEQLNARLEGSELAELTLEEIIAQAQGTLFHLAAQVWNHNFYWQC
LRPRAGGEPLGRLGEGIAKSFGDFVHFKQEFNRVALTSFGSGWVWLVQRPDGALAVVATPNASTPLTGPDVPLLACDIWE
HAYYLDYQQDRARYLEAFWKLVNWDFVASRLG
>Mature_191_residues
PIEHVALPYSRAALEPHLSSATLEAHHGVCHRSEVEQLNARLEGSELAELTLEEIIAQAQGTLFHLAAQVWNHNFYWQCL
RPRAGGEPLGRLGEGIAKSFGDFVHFKQEFNRVALTSFGSGWVWLVQRPDGALAVVATPNASTPLTGPDVPLLACDIWEH
AYYLDYQQDRARYLEAFWKLVNWDFVASRLG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=188, Percent_Identity=38.8297872340425, Blast_Score=132, Evalue=2e-31,
Organism=Homo sapiens, GI67782305, Length=188, Percent_Identity=38.8297872340425, Blast_Score=132, Evalue=2e-31,
Organism=Homo sapiens, GI67782309, Length=186, Percent_Identity=32.7956989247312, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI1787946, Length=191, Percent_Identity=53.9267015706806, Blast_Score=226, Evalue=8e-61,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=40, Blast_Score=142, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=188, Percent_Identity=35.1063829787234, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17569479, Length=187, Percent_Identity=33.1550802139037, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6321796, Length=198, Percent_Identity=36.3636363636364, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI17136812, Length=192, Percent_Identity=35.9375, Blast_Score=111, Evalue=3e-25,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21536; Mature: 21405

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIEHVALPYSRAALEPHLSSATLEAHHGVCHRSEVEQLNARLEGSELAELTLEEIIAQA
CCCCCCCCCHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QGTLFHLAAQVWNHNFYWQCLRPRAGGEPLGRLGEGIAKSFGDFVHFKQEFNRVALTSFG
CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECC
SGWVWLVQRPDGALAVVATPNASTPLTGPDVPLLACDIWEHAYYLDYQQDRARYLEAFWK
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHEEECCHHHHHHHHHHHHH
LVNWDFVASRLG
HHHHHHHHHHCC
>Mature Secondary Structure 
PIEHVALPYSRAALEPHLSSATLEAHHGVCHRSEVEQLNARLEGSELAELTLEEIIAQA
CCCCCCCCHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
QGTLFHLAAQVWNHNFYWQCLRPRAGGEPLGRLGEGIAKSFGDFVHFKQEFNRVALTSFG
CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECC
SGWVWLVQRPDGALAVVATPNASTPLTGPDVPLLACDIWEHAYYLDYQQDRARYLEAFWK
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHEEECCHHHHHHHHHHHHH
LVNWDFVASRLG
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]