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The map label for this gene is ypdA [H]

Identifier: 21243399

GI number: 21243399

Start: 3127891

End: 3128919

Strand: Direct

Name: ypdA [H]

Synonym: XAC2670

Alternate gene names: 21243399

Gene position: 3127891-3128919 (Clockwise)

Preceding gene: 21243389

Following gene: 21243402

Centisome position: 60.44

GC content: 55.98

Gene sequence:

>1029_bases
ATGCCAACCGCTACCGGCGAATCATTCTTGCAAGCCCTGTGGGACTCTCGTACTCTGGTGTGCGTCGTGCTCGTGGCGGA
AGCAATCGCGGCAGCACTGAGCCTAGCGCCAGGCACACAGATCGGCTGGATCAGCTTCGGAATCACATCATTCATGACGC
AATGGACGGCACTTCTGACTTTGGCCGGCCTGTATGTTTTTCGCCATCACCTTAGGAATGCACGCCCAGTCATGATAGCC
AAGGTCACCCTTGCGCTTCTCCTGATTGCCGCAGCGTTAGTACTATTTATTGCAATGGCGGTGGTCGGTGGCGCGTGGTC
GATGGGTACACGCAACTGGCTGGAACTGCTACTGCGGACCGAAGGCATCGCGCTGACCGTCGGATTGTTGGGAATGTGGG
CCTTCCACACACATTGGCGCGCGCGCCAATATGCAATACGTGCGAAGCAGTTCGAGCTGGAAGCGTTGAGGGCGAGAATC
CAGCCGCACTTTCTGTTCAATACACTCAATACGGGGGCAGCGCTCGTACGCCTGAATCCAGCGCGTGCCGAACGCTTGTT
AATGGATCTGGCAGAACTATTTCGAGCGACATTGGCTGGGCCAGAGCACATACTCCTCTCCAAAGAACTAGACATCGCAA
AGCACTATCTGGATATCGAGCAAATCCGCTTCGGAGAGCGCCTGAGCATCGTGTGGAAGGTTCCTGATGAAATCCCGCCC
GTGACAGTTCCTTCTCTATCTATCCAGCCCCTTGTTGAGAATGCAATTCGCCATGGTGTGGAACTCCGTTCAGAGGTATC
GCAGATAGTTGTAGAAGTCCGCCAAACATCGGAAACGATTGTCGTAGAAGTCAGCAACCCCCTGCCGCCTGACAAGACGA
CAGCGCGCACCGGGCACCAAGTAGGACTTGCCGCCGTCCGTGCCCGGCTACACGATCTTGACAGCAGAATGGGACTTCAA
ACTACGACGCAGGGCAACCAGTTTCTGGCTACCCTGCATGCCCCGCTCGCAGAGATACCGTCTCGCTAA

Upstream 100 bases:

>100_bases
GCTTGACGACGGACGGCCACTGCGGATGCGTGAAAGGCAGTTTCCCAAACCGCTCAAGACACGGGCATGATGTGTAGCAA
GCCTCCGAGCCCCCTTACCG

Downstream 100 bases:

>100_bases
TCTAGGTCACCACCCGATAACAAGGCCGATAGTCCCCAGAGATCTTCATCCGGCGCTGCTCGACAAAGCCGCGCAGGAGT
TCGTCCAGGGCCTGCATGAT

Product: alginate biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MPTATGESFLQALWDSRTLVCVVLVAEAIAAALSLAPGTQIGWISFGITSFMTQWTALLTLAGLYVFRHHLRNARPVMIA
KVTLALLLIAAALVLFIAMAVVGGAWSMGTRNWLELLLRTEGIALTVGLLGMWAFHTHWRARQYAIRAKQFELEALRARI
QPHFLFNTLNTGAALVRLNPARAERLLMDLAELFRATLAGPEHILLSKELDIAKHYLDIEQIRFGERLSIVWKVPDEIPP
VTVPSLSIQPLVENAIRHGVELRSEVSQIVVEVRQTSETIVVEVSNPLPPDKTTARTGHQVGLAAVRARLHDLDSRMGLQ
TTTQGNQFLATLHAPLAEIPSR

Sequences:

>Translated_342_residues
MPTATGESFLQALWDSRTLVCVVLVAEAIAAALSLAPGTQIGWISFGITSFMTQWTALLTLAGLYVFRHHLRNARPVMIA
KVTLALLLIAAALVLFIAMAVVGGAWSMGTRNWLELLLRTEGIALTVGLLGMWAFHTHWRARQYAIRAKQFELEALRARI
QPHFLFNTLNTGAALVRLNPARAERLLMDLAELFRATLAGPEHILLSKELDIAKHYLDIEQIRFGERLSIVWKVPDEIPP
VTVPSLSIQPLVENAIRHGVELRSEVSQIVVEVRQTSETIVVEVSNPLPPDKTTARTGHQVGLAAVRARLHDLDSRMGLQ
TTTQGNQFLATLHAPLAEIPSR
>Mature_341_residues
PTATGESFLQALWDSRTLVCVVLVAEAIAAALSLAPGTQIGWISFGITSFMTQWTALLTLAGLYVFRHHLRNARPVMIAK
VTLALLLIAAALVLFIAMAVVGGAWSMGTRNWLELLLRTEGIALTVGLLGMWAFHTHWRARQYAIRAKQFELEALRARIQ
PHFLFNTLNTGAALVRLNPARAERLLMDLAELFRATLAGPEHILLSKELDIAKHYLDIEQIRFGERLSIVWKVPDEIPPV
TVPSLSIQPLVENAIRHGVELRSEVSQIVVEVRQTSETIVVEVSNPLPPDKTTARTGHQVGLAAVRARLHDLDSRMGLQT
TTQGNQFLATLHAPLAEIPSR

Specific function: Unknown

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=181, Percent_Identity=35.3591160220994, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788446, Length=138, Percent_Identity=34.0579710144928, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 37778; Mature: 37647

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTATGESFLQALWDSRTLVCVVLVAEAIAAALSLAPGTQIGWISFGITSFMTQWTALLT
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LAGLYVFRHHLRNARPVMIAKVTLALLLIAAALVLFIAMAVVGGAWSMGTRNWLELLLRT
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
EGIALTVGLLGMWAFHTHWRARQYAIRAKQFELEALRARIQPHFLFNTLNTGAALVRLNP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCEEEEEECH
ARAERLLMDLAELFRATLAGPEHILLSKELDIAKHYLDIEQIRFGERLSIVWKVPDEIPP
HHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
VTVPSLSIQPLVENAIRHGVELRSEVSQIVVEVRQTSETIVVEVSNPLPPDKTTARTGHQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHH
VGLAAVRARLHDLDSRMGLQTTTQGNQFLATLHAPLAEIPSR
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHCCCC
>Mature Secondary Structure 
PTATGESFLQALWDSRTLVCVVLVAEAIAAALSLAPGTQIGWISFGITSFMTQWTALLT
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LAGLYVFRHHLRNARPVMIAKVTLALLLIAAALVLFIAMAVVGGAWSMGTRNWLELLLRT
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
EGIALTVGLLGMWAFHTHWRARQYAIRAKQFELEALRARIQPHFLFNTLNTGAALVRLNP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCEEEEEECH
ARAERLLMDLAELFRATLAGPEHILLSKELDIAKHYLDIEQIRFGERLSIVWKVPDEIPP
HHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
VTVPSLSIQPLVENAIRHGVELRSEVSQIVVEVRQTSETIVVEVSNPLPPDKTTARTGHQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHH
VGLAAVRARLHDLDSRMGLQTTTQGNQFLATLHAPLAEIPSR
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]