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The map label for this gene is yubD [H]

Identifier: 21243368

GI number: 21243368

Start: 3104373

End: 3105074

Strand: Reverse

Name: yubD [H]

Synonym: XAC2639

Alternate gene names: 21243368

Gene position: 3105074-3104373 (Counterclockwise)

Preceding gene: 21243369

Following gene: 21243361

Centisome position: 60.0

GC content: 65.53

Gene sequence:

>702_bases
ATGAAAAATCAGCTCCTGCAGGGCGACGCCCTGACCATCCTACCCACGCTCGAAGCGAATTCGTTCGACGCGCTGATCAC
TGACCCGCCATATGCCAGCGGTGGGCTGACCGCCGCTGCCCGTGCGCGGCCGCCCTCGACCAAGTACTGCCGGGATGGAG
GGCACGCCGACTTCGTTGGCGACGAACGCGACCAGCGCTCGCACCTGAAGTGGATGCACCTGTGGCTGTCCGAGTGCGCG
CGCGTGCTCAAGGACGGCGCGCCGGTGCTGCTGTTCACCGACTGGCGACAGCTGACGCTGACCACCGACGCGCTACAGAT
CGCGGGGTTTACCTGGCGCGGCATCACTGTCTGGGACAAGACTGAAGGCGTGCGGCCGCAGTTGGGCCGATTCCGCAACC
AGGCCGAGTACATCGTGTGGGGCAGCAAGGGCAACATGCCGCTGGATCGCCGCGCGCCGGTGCTGCCAGGTGTTATCCGC
GAGTCCGTACGCAAGGCTGACAAGCACCACCTGACCGGCAAGCCCACCGAATTGATGCGGCAGCTGGTGCGGATCTGCGA
GGCAGGTGGGCGCGTGCTCGATCCGTTTGCTGGCAGCGGAACCACATTGGTGGCCGCGCAGCTGGAAGGATTCGAGGCGG
TCGGGATTGAGATGACGGATCAGTACGCCACCGTTACCCGCGACCGGCTGACAGCGCTGTAA

Upstream 100 bases:

>100_bases
GAAATTCAGATCAAGTGTCCGCGCTGCGGCACGCTCAATCACCTGAAGGCCGAGAGCCTCACCTCCGATCGCCGCGAGCG
AATCCAAGAAGGCTCTCACC

Downstream 100 bases:

>100_bases
TCAGACGACCGGGCCGCCCCTAGCGGCTCGGTTTTCATTGCGCGGGGGATGGGCGCAAGGCAATCACGCGATACTGGCCA
CGATCGCCATAGCGTGGCCC

Product: site-specific DNA-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGDERDQRSHLKWMHLWLSECA
RVLKDGAPVLLFTDWRQLTLTTDALQIAGFTWRGITVWDKTEGVRPQLGRFRNQAEYIVWGSKGNMPLDRRAPVLPGVIR
ESVRKADKHHLTGKPTELMRQLVRICEAGGRVLDPFAGSGTTLVAAQLEGFEAVGIEMTDQYATVTRDRLTAL

Sequences:

>Translated_233_residues
MKNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGDERDQRSHLKWMHLWLSECA
RVLKDGAPVLLFTDWRQLTLTTDALQIAGFTWRGITVWDKTEGVRPQLGRFRNQAEYIVWGSKGNMPLDRRAPVLPGVIR
ESVRKADKHHLTGKPTELMRQLVRICEAGGRVLDPFAGSGTTLVAAQLEGFEAVGIEMTDQYATVTRDRLTAL
>Mature_233_residues
MKNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGDERDQRSHLKWMHLWLSECA
RVLKDGAPVLLFTDWRQLTLTTDALQIAGFTWRGITVWDKTEGVRPQLGRFRNQAEYIVWGSKGNMPLDRRAPVLPGVIR
ESVRKADKHHLTGKPTELMRQLVRICEAGGRVLDPFAGSGTTLVAAQLEGFEAVGIEMTDQYATVTRDRLTAL

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: NA

Molecular weight: Translated: 25812; Mature: 25812

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVG
CCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCHHCCCCCCCHHHCCCCCCCCCC
DERDQRSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLTLTTDALQIAGFTWRGITVWDK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEHHHHHHCCEEECCEEEECC
TEGVRPQLGRFRNQAEYIVWGSKGNMPLDRRAPVLPGVIRESVRKADKHHLTGKPTELMR
CCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
QLVRICEAGGRVLDPFAGSGTTLVAAQLEGFEAVGIEMTDQYATVTRDRLTAL
HHHHHHHCCCCEECCCCCCCCEEEEEECCCCEEECEEECCHHHHHHHHHHHCC
>Mature Secondary Structure
MKNQLLQGDALTILPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVG
CCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCHHCCCCCCCHHHCCCCCCCCCC
DERDQRSHLKWMHLWLSECARVLKDGAPVLLFTDWRQLTLTTDALQIAGFTWRGITVWDK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEHHHHHHCCEEECCEEEECC
TEGVRPQLGRFRNQAEYIVWGSKGNMPLDRRAPVLPGVIRESVRKADKHHLTGKPTELMR
CCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
QLVRICEAGGRVLDPFAGSGTTLVAAQLEGFEAVGIEMTDQYATVTRDRLTAL
HHHHHHHCCCCEECCCCCCCCEEEEEECCCCEEECEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]