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The map label for this gene is cdh [H]

Identifier: 21243301

GI number: 21243301

Start: 3028773

End: 3029732

Strand: Reverse

Name: cdh [H]

Synonym: XAC2569

Alternate gene names: 21243301

Gene position: 3029732-3028773 (Counterclockwise)

Preceding gene: 21243302

Following gene: 21243300

Centisome position: 58.54

GC content: 64.9

Gene sequence:

>960_bases
ATGAGCCTGCGCATTCTCGTGACCGGCGCGTCCGGTTTTGTCGGTGGTGCGTTCCTGCGGCGCTTTCAGGGGCAGCCGGC
TGTCGAGATTCGCGGCATCGGTCGTCGCGCCAGCGATCTGCCCAACTACCATCGCCTCGATCTGAGCCGGGCGTTTTCGC
TGGACTGGCAACCGGATGTGGTGATTCATGCAGCTGCGTTGGCCTCGCCGTGGGGCACGCGTGCGCAGTTTCAGCTGCAC
AACGTCCAGGCCACCGCCAATGTCATCGACTTCTGCAAACGCAACGGCTGCCCGCGCCTGCTGTATGTCTCCTCCAGTTC
GGTGTTCTATCGCGAAGCGCATCAATACGACCTGGACGAAGACAGCCCGATCGGCCCGGCGTTCGTCAATACTTACGCAG
AAACCAAATATCTTGGCGAAACCCTGCTCGATGACTACCCGGGGCAGAAGTGCGTCTTGCGCCCGCGTGCGGTGTTCGGG
CCCGGCGACACGGTGCTGTTTCCGCGCGTGATCGCCGCGGCGCGCAAGGGCGCGTTGCCACGTTTCGTCGGCCAGACCCA
GCCGGTGATCGGCGACCTGATCTATATCGATACGCTGTGCGATTACCTGTACCGCGCGGCCACCGCGCCGCAGTTGCAGG
CTGCTTACAATCTCACCAACGCACAACCGGTGGACCTGCAGCACGTGTTGTTGGAGGTGCTGGCGCGCCTGCAGCTGCCA
TTGCCACGGCGCGAGGTACGCATCGGCACCGCACTGCGCATGGCCAGCGCGGTGGAGGCGGTGTATCGCGGGCTGCGGCT
GCGGGGCGAGCCGCCAATCACGCGCTTCGGCGTTGGCGTGTTCGCGTATTCCAAGACCTTCGATCCGCGCCGCACGCTTG
CCGATCTTGGCCCGCCCAGTGTTGGCCTGGACGAGGGTGTGGACGCCTTCGTGCGCTGGCAGGCAGCGCAGTGGAGCTGA

Upstream 100 bases:

>100_bases
CCGTGCATCGCTTGCACGCCTTGTCGCACGCCCATCCGGAGCTGGCGATCCTGCCCTCGCATTGCCAGCCGAGTCTTGAC
CGTTATCAACCGGAGTGGCG

Downstream 100 bases:

>100_bases
TCGTCCCAATCCTGGCAGCGGCGTATCTGGCCGTGCTGCTGGTCAAGACGGCGGCCGCGCTGTGGGTCGTGCGCGGCGAA
CGGCTGAGGCCAGCGCGCAG

Product: NAD(P)H steroid dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSLRILVTGASGFVGGAFLRRFQGQPAVEIRGIGRRASDLPNYHRLDLSRAFSLDWQPDVVIHAAALASPWGTRAQFQLH
NVQATANVIDFCKRNGCPRLLYVSSSSVFYREAHQYDLDEDSPIGPAFVNTYAETKYLGETLLDDYPGQKCVLRPRAVFG
PGDTVLFPRVIAAARKGALPRFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAQPVDLQHVLLEVLARLQLP
LPRREVRIGTALRMASAVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPSVGLDEGVDAFVRWQAAQWS

Sequences:

>Translated_319_residues
MSLRILVTGASGFVGGAFLRRFQGQPAVEIRGIGRRASDLPNYHRLDLSRAFSLDWQPDVVIHAAALASPWGTRAQFQLH
NVQATANVIDFCKRNGCPRLLYVSSSSVFYREAHQYDLDEDSPIGPAFVNTYAETKYLGETLLDDYPGQKCVLRPRAVFG
PGDTVLFPRVIAAARKGALPRFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAQPVDLQHVLLEVLARLQLP
LPRREVRIGTALRMASAVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPSVGLDEGVDAFVRWQAAQWS
>Mature_318_residues
SLRILVTGASGFVGGAFLRRFQGQPAVEIRGIGRRASDLPNYHRLDLSRAFSLDWQPDVVIHAAALASPWGTRAQFQLHN
VQATANVIDFCKRNGCPRLLYVSSSSVFYREAHQYDLDEDSPIGPAFVNTYAETKYLGETLLDDYPGQKCVLRPRAVFGP
GDTVLFPRVIAAARKGALPRFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAQPVDLQHVLLEVLARLQLPL
PRREVRIGTALRMASAVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPSVGLDEGVDAFVRWQAAQWS

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=261, Percent_Identity=26.4367816091954, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI8393516, Length=261, Percent_Identity=26.4367816091954, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI116268111, Length=348, Percent_Identity=24.1379310344828, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081792, Length=335, Percent_Identity=25.0746268656716, Blast_Score=102, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6321437, Length=343, Percent_Identity=24.4897959183673, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 35287; Mature: 35156

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRILVTGASGFVGGAFLRRFQGQPAVEIRGIGRRASDLPNYHRLDLSRAFSLDWQPDV
CCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHCCCCHHEECHHHHCCCCCCCCC
VIHAAALASPWGTRAQFQLHNVQATANVIDFCKRNGCPRLLYVSSSSVFYREAHQYDLDE
EEEEHHHCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEEECCCEEEHHHHCCCCCC
DSPIGPAFVNTYAETKYLGETLLDDYPGQKCVLRPRAVFGPGDTVLFPRVIAAARKGALP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEECCCCCHHHHHHHHHHHHCCCH
RFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAQPVDLQHVLLEVLARLQLP
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
LPRREVRIGTALRMASAVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPS
CCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHCCEEEEECCCCCHHHHHHHCCCCC
VGLDEGVDAFVRWQAAQWS
CCHHHCCHHHHEEECCCCC
>Mature Secondary Structure 
SLRILVTGASGFVGGAFLRRFQGQPAVEIRGIGRRASDLPNYHRLDLSRAFSLDWQPDV
CEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHCCCCHHEECHHHHCCCCCCCCC
VIHAAALASPWGTRAQFQLHNVQATANVIDFCKRNGCPRLLYVSSSSVFYREAHQYDLDE
EEEEHHHCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEEECCCEEEHHHHCCCCCC
DSPIGPAFVNTYAETKYLGETLLDDYPGQKCVLRPRAVFGPGDTVLFPRVIAAARKGALP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEECCCCCHHHHHHHHHHHHCCCH
RFVGQTQPVIGDLIYIDTLCDYLYRAATAPQLQAAYNLTNAQPVDLQHVLLEVLARLQLP
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
LPRREVRIGTALRMASAVEAVYRGLRLRGEPPITRFGVGVFAYSKTFDPRRTLADLGPPS
CCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHCCEEEEECCCCCHHHHHHHCCCCC
VGLDEGVDAFVRWQAAQWS
CCHHHCCHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]