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The map label for this gene is rci [H]

Identifier: 21243151

GI number: 21243151

Start: 2818642

End: 2819589

Strand: Direct

Name: rci [H]

Synonym: XAC2418

Alternate gene names: 21243151

Gene position: 2818642-2819589 (Clockwise)

Preceding gene: 21243150

Following gene: 21243152

Centisome position: 54.46

GC content: 58.97

Gene sequence:

>948_bases
GTGTTCGTGAGCCGAACAGAGGCAGAGTCAACGACTCTTTGCGAGGCGCTTGATCGATACGAGCGCGAAATCGTCTCCTT
GAAGAAGGGGAAGGCCCAAGAAGTTTCCCTGCTGAAGACGTGGAGGGCAACGCCGGTCGCGCAACGATCGATGGCGTCGG
TACGCAGTTCGGACATAGCCAAATTGCGCGACGACTGGCTGAGGCAGACCAACCCGGCATTGAAGCCGGCGTCAGTGCTT
CGACGCTTGGCCATCCTCTCCCACGTTTTCAGTATCGCCCGCAAGGAATGGGGGATGGAAAGTCTTTCCAATCCCCTCGA
GCTCGTGCGCAAACCGCCCGCGAACAATGCTCGCACCCGGCGAGTCAGAGAAACCGAAGGTGACTCTCGGGACGACCGAC
GCGCGCCCGATGGCGAACTGAAGCGAGTCGTCTCGGCAAGCAGCTCCGACGTGTTGCCGACAATCATTTCCCTCGCGGTG
GAGACTGCAATGCGCCGTGGCGAAATTGTTGATCTTCGGTGGGAACATGTAGATCTCAAACGCCACGTAGCCCACCTGCC
CCACACCAAGAACGGGAGCTCGCGGGATGTACCACTTTCGCCCCGCGCCGTTGAAGCCCTCAAAGAGTGGCGAAAGGTCG
TCGGCAAAAATCCGGGTGACGGGCGCGTTTTCTCAATTCGCGGAGATGCGGTGACGAGAGCGTTCGAGCGCGCGGTAGAT
CGAGCACGAAAAACCTACGAGCAAGAATGTAGGGATGCGGGTCGGACGCCGGATGCAAAATACTTAATCGACCTTCGCTT
TCACGACCTGAGGCACGAAGCCACGTCCCGGCTGGCATCGATCTTTCCGATGCACGAGCTGGCCAAGATTACCGGCCATC
GCGATCCGCGGATGCTAATGAGGTACTACCATCCCAGCGCAGAAGACTTGGCAAAGCGGCTTCGATAG

Upstream 100 bases:

>100_bases
CGTTCGGCGCAAGGGCTACCCCGTACAGATCAAGACGTTCAATACGCGCTCGGAAGCGGAAGCTTGGGCGCGTCAGGTCG
AATCCGAAATTGATCGCGGC

Downstream 100 bases:

>100_bases
TGATCCGGTGCATACGTACGGAATTACGTACATACGTATGTACGCAGCAAGTTGCGCAGCAATGATGCTTGACGCGTATG
GAGGATCACTCTAAATTCTT

Product: shufflon-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MFVSRTEAESTTLCEALDRYEREIVSLKKGKAQEVSLLKTWRATPVAQRSMASVRSSDIAKLRDDWLRQTNPALKPASVL
RRLAILSHVFSIARKEWGMESLSNPLELVRKPPANNARTRRVRETEGDSRDDRRAPDGELKRVVSASSSDVLPTIISLAV
ETAMRRGEIVDLRWEHVDLKRHVAHLPHTKNGSSRDVPLSPRAVEALKEWRKVVGKNPGDGRVFSIRGDAVTRAFERAVD
RARKTYEQECRDAGRTPDAKYLIDLRFHDLRHEATSRLASIFPMHELAKITGHRDPRMLMRYYHPSAEDLAKRLR

Sequences:

>Translated_315_residues
MFVSRTEAESTTLCEALDRYEREIVSLKKGKAQEVSLLKTWRATPVAQRSMASVRSSDIAKLRDDWLRQTNPALKPASVL
RRLAILSHVFSIARKEWGMESLSNPLELVRKPPANNARTRRVRETEGDSRDDRRAPDGELKRVVSASSSDVLPTIISLAV
ETAMRRGEIVDLRWEHVDLKRHVAHLPHTKNGSSRDVPLSPRAVEALKEWRKVVGKNPGDGRVFSIRGDAVTRAFERAVD
RARKTYEQECRDAGRTPDAKYLIDLRFHDLRHEATSRLASIFPMHELAKITGHRDPRMLMRYYHPSAEDLAKRLR
>Mature_315_residues
MFVSRTEAESTTLCEALDRYEREIVSLKKGKAQEVSLLKTWRATPVAQRSMASVRSSDIAKLRDDWLRQTNPALKPASVL
RRLAILSHVFSIARKEWGMESLSNPLELVRKPPANNARTRRVRETEGDSRDDRRAPDGELKRVVSASSSDVLPTIISLAV
ETAMRRGEIVDLRWEHVDLKRHVAHLPHTKNGSSRDVPLSPRAVEALKEWRKVVGKNPGDGRVFSIRGDAVTRAFERAVD
RARKTYEQECRDAGRTPDAKYLIDLRFHDLRHEATSRLASIFPMHELAKITGHRDPRMLMRYYHPSAEDLAKRLR

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=254, Percent_Identity=27.5590551181102, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35995; Mature: 35995

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVSRTEAESTTLCEALDRYEREIVSLKKGKAQEVSLLKTWRATPVAQRSMASVRSSDIA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KLRDDWLRQTNPALKPASVLRRLAILSHVFSIARKEWGMESLSNPLELVRKPPANNARTR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHCCCCCCHHHH
RVRETEGDSRDDRRAPDGELKRVVSASSSDVLPTIISLAVETAMRRGEIVDLRWEHVDLK
HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
RHVAHLPHTKNGSSRDVPLSPRAVEALKEWRKVVGKNPGDGRVFSIRGDAVTRAFERAVD
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHH
RARKTYEQECRDAGRTPDAKYLIDLRFHDLRHEATSRLASIFPMHELAKITGHRDPRMLM
HHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RYYHPSAEDLAKRLR
HHHCCCHHHHHHHCC
>Mature Secondary Structure
MFVSRTEAESTTLCEALDRYEREIVSLKKGKAQEVSLLKTWRATPVAQRSMASVRSSDIA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KLRDDWLRQTNPALKPASVLRRLAILSHVFSIARKEWGMESLSNPLELVRKPPANNARTR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHCCCCCCHHHH
RVRETEGDSRDDRRAPDGELKRVVSASSSDVLPTIISLAVETAMRRGEIVDLRWEHVDLK
HHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
RHVAHLPHTKNGSSRDVPLSPRAVEALKEWRKVVGKNPGDGRVFSIRGDAVTRAFERAVD
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHH
RARKTYEQECRDAGRTPDAKYLIDLRFHDLRHEATSRLASIFPMHELAKITGHRDPRMLM
HHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RYYHPSAEDLAKRLR
HHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]