Click here to switch to the map view.

The map label for this gene is lacF [H]

Identifier: 21243044

GI number: 21243044

Start: 2700428

End: 2701312

Strand: Reverse

Name: lacF [H]

Synonym: XAC2309

Alternate gene names: 21243044

Gene position: 2701312-2700428 (Counterclockwise)

Preceding gene: 21243045

Following gene: 21243043

Centisome position: 52.19

GC content: 62.03

Gene sequence:

>885_bases
ATGATGAAGCGTAATTCCGTCGCCGGCTGGGTGTTCGCCGCGCCGTCGATCTTGGTGCTGGGCATGTTCTTTGGCGTGCC
GGTGTTCGCCGCGCTGGTGCTCAGCGTGACCGACTTCGACCTGTATGCATTGGCCGACAGCAGCCATCTGCGCTTTGTCG
GCCTGGGCAACTACATCGACCTGCTGCAGACGCCGCTGTTCTGGAAGTCGCTGTGGAACACCACATATTTCGTGCTGCTG
GGCGTGCCGATGTCGATCGGCGTGTCGCTGGGCGCGGCGCTGTTGCTCAACGCCAAGGCCTCGCGCTTCAAGGCGTTGTT
CCGTACCGCCTTGTTCGCGCCGGTGGTGACCACGTTGGTGGCGGTGGCGGTGATCTGGCGCTACCTGTTCCACATCAAGT
ACGGCCTGGTGAACTTCGGCCTGGCCCAGTTGGGGATCGCCCCAATCGACTGGCTGGGCGACCCGCGTTGGGCGATGCCC
ACCATCATGCTGTTCGCGGTGTGGAAGAACTTCGGCTACAACATGGTGATCTTCCTGGCCGGGCTGCAGGCGATCCCGCA
GGATTTGTACGAAGCTGCGCGCATCGATGGCGCTTCACGCTGGAAGCAGTTCGTGCACATCACCGTGCCGATGCTCGGCC
CGGTGCTGATGGTGGTCGGCGTGATCACCATTTCCGGCTACTTCCAGCTGTTCGCCGAACCCTACGTGATGACCCGCGGC
GACCCGCTGCAAAGCACCGTCAGCGTGCTGTATTTCATGTTCGAGGAAGGCTTCAAGTGGTGGAACCTCGGCCGCGCCTC
GGCGGTGGCGTTCCTGTTGTTCCTCATCATTCTGGCGGTGACCACCGTGATGCTGCGCTTTGGCCGCAAGAAGGACCTGA
TATGA

Upstream 100 bases:

>100_bases
GGCATGTCGGCCCGGCCGGTGACACGGCCCAGCCGGTAGTGAGGCCAGCTGCTGCAGACACCACCGCGCCAGCCGCCGCA
TCGGACCAGGGAGCCGCACG

Downstream 100 bases:

>100_bases
GCCGTGAAGTTGGCCAATCACGCTGGAATGCCGTGCTGATCAACGGCGGCCTGCTGGTGCTGGCGGTGATCAGCCTGGCG
CCGCTGCTGTGGATGCTGTC

Product: ABC transporter sugar permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MMKRNSVAGWVFAAPSILVLGMFFGVPVFAALVLSVTDFDLYALADSSHLRFVGLGNYIDLLQTPLFWKSLWNTTYFVLL
GVPMSIGVSLGAALLLNAKASRFKALFRTALFAPVVTTLVAVAVIWRYLFHIKYGLVNFGLAQLGIAPIDWLGDPRWAMP
TIMLFAVWKNFGYNMVIFLAGLQAIPQDLYEAARIDGASRWKQFVHITVPMLGPVLMVVGVITISGYFQLFAEPYVMTRG
DPLQSTVSVLYFMFEEGFKWWNLGRASAVAFLLFLIILAVTTVMLRFGRKKDLI

Sequences:

>Translated_294_residues
MMKRNSVAGWVFAAPSILVLGMFFGVPVFAALVLSVTDFDLYALADSSHLRFVGLGNYIDLLQTPLFWKSLWNTTYFVLL
GVPMSIGVSLGAALLLNAKASRFKALFRTALFAPVVTTLVAVAVIWRYLFHIKYGLVNFGLAQLGIAPIDWLGDPRWAMP
TIMLFAVWKNFGYNMVIFLAGLQAIPQDLYEAARIDGASRWKQFVHITVPMLGPVLMVVGVITISGYFQLFAEPYVMTRG
DPLQSTVSVLYFMFEEGFKWWNLGRASAVAFLLFLIILAVTTVMLRFGRKKDLI
>Mature_294_residues
MMKRNSVAGWVFAAPSILVLGMFFGVPVFAALVLSVTDFDLYALADSSHLRFVGLGNYIDLLQTPLFWKSLWNTTYFVLL
GVPMSIGVSLGAALLLNAKASRFKALFRTALFAPVVTTLVAVAVIWRYLFHIKYGLVNFGLAQLGIAPIDWLGDPRWAMP
TIMLFAVWKNFGYNMVIFLAGLQAIPQDLYEAARIDGASRWKQFVHITVPMLGPVLMVVGVITISGYFQLFAEPYVMTRG
DPLQSTVSVLYFMFEEGFKWWNLGRASAVAFLLFLIILAVTTVMLRFGRKKDLI

Specific function: Part of the binding-protein-dependent transport system for lactose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=234, Percent_Identity=35.042735042735, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789861, Length=287, Percent_Identity=29.9651567944251, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790465, Length=242, Percent_Identity=30.5785123966942, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32845; Mature: 32845

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRNSVAGWVFAAPSILVLGMFFGVPVFAALVLSVTDFDLYALADSSHLRFVGLGNYID
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHH
LLQTPLFWKSLWNTTYFVLLGVPMSIGVSLGAALLLNAKASRFKALFRTALFAPVVTTLV
HHHCHHHHHHHHCCCEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAVIWRYLFHIKYGLVNFGLAQLGIAPIDWLGDPRWAMPTIMLFAVWKNFGYNMVIFLA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
GLQAIPQDLYEAARIDGASRWKQFVHITVPMLGPVLMVVGVITISGYFQLFAEPYVMTRG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
DPLQSTVSVLYFMFEEGFKWWNLGRASAVAFLLFLIILAVTTVMLRFGRKKDLI
CCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMKRNSVAGWVFAAPSILVLGMFFGVPVFAALVLSVTDFDLYALADSSHLRFVGLGNYID
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHH
LLQTPLFWKSLWNTTYFVLLGVPMSIGVSLGAALLLNAKASRFKALFRTALFAPVVTTLV
HHHCHHHHHHHHCCCEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAVIWRYLFHIKYGLVNFGLAQLGIAPIDWLGDPRWAMPTIMLFAVWKNFGYNMVIFLA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
GLQAIPQDLYEAARIDGASRWKQFVHITVPMLGPVLMVVGVITISGYFQLFAEPYVMTRG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
DPLQSTVSVLYFMFEEGFKWWNLGRASAVAFLLFLIILAVTTVMLRFGRKKDLI
CCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1630315 [H]