| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is helD [H]
Identifier: 21243000
GI number: 21243000
Start: 2648746
End: 2651565
Strand: Direct
Name: helD [H]
Synonym: XAC2265
Alternate gene names: 21243000
Gene position: 2648746-2651565 (Clockwise)
Preceding gene: 21242995
Following gene: 21243004
Centisome position: 51.18
GC content: 63.01
Gene sequence:
>2820_bases GTGCAGGATCGGGCGCCGTCGTGGTTCCTGCCGCGTTGGCTGGATCGCGGGCACGTCGTTCTGACCTACCGATCCGGCAA GGAAGAATACCAACGGTCCTTCGTCCTGCGTGGTGCAGCCCGCGCGCAAGCTCGCAAGGACATCCTGCAGCGCGCCCACC GGGAATTGACACGCGCGCTCGATGCGGCCGACCGGGCACTGGTCCCGATTCGATCCGACATCGAGCGCACATACCGGTCG GACCGCTACGTGCGGCATTCTCAGGCAGCGCGGATCACAAGCAACCATGCGGACATGGCTCGGAAGGTAGCGCCAGTCCT GGATGCGCTTCACCGGCACCCATTGCTTGCGCCGAGTGATAGGGAGTTGGCCCGGTCGTTGAAGGACGAACTGGCCGACC TCGCCAAGCGGGTCAACAAACCCGAAGCATCGCGCACGGAGCACAACGAGCAGTATCTCGCGTACCAGATCGAGGCCGAG GCCGATTACTTCAATGCGGTCGAAAGCAGCCCCCTGACCCCGGAGCAGACCGCAGCAGCACTGGTCTTCGAGGATGCGAC GCTGGTGGTTGCCGCCGCGGGTTCGGGCAAGAGCTCGTGCATCGTCGGCAAGATCGGCTTCGCGCTCAAGTCCGGTCTGT TCCAGGACCACGAGATCCTCGCGCTGGCCTACAACAAGAAAGCCGCCAAAAGCCTGGATGAGCGGCTGTCCAAGAAGCTC TCGAAGGCCATCGGGCGGAAGGTCGCGGTGGCATCTAAAACCTTCCATTCTTTCGGTCTGTCCGTGATGGTCGAGGCCAA TGGGGAAGGCATCCGTCCGCGCGTACTGAAGGAAGAGGCGGGGGAAGAAGGACGTTTCCTGCGCACGGTCATCGACCGGT TGAAGGATGAGGATCTCCCTTTTCAGCAGGCACTCGCCGATTGGCTCCTTTTCGCGCCCTTCGAGGACCCCAGTCCGTCC GGCATTGCTGGCAATCTGGAGGACTGCGAGAAGCGCTACGAAGAATGCTGCCGGCAGCGCATCAAGGCGAAGAGAGAAGA AGGAAAGAAGAGCTACGAACCCACCATTCCCACGCTGGACCCTGCGATCCACGTACGCTCCCTGGAAGAGCGCAGCATCG TGAACTGGCTGTTCCTGCGCGGCATTCCCGTCGGGTATGAAACGCCCGACTGGGACGGAGCCAAACTCCTCGGACTCGGC GTGTCCGAATCGACGAAGAGGCAGCGCCCTTACAAGCCGGACTTCACCTACTGCCAGACCCAGCAATTGAGCAATGGAAC CCAGCGCGAGGTACGCGTCATCCACGAGCATTTCGCGCTCGACGGCAACGGCCGGGCACCGGCATGGATGGGCGGTGCCG AGTACGAGGCACAGGCCCGCAGCAAGCGTGCGATGTTCAAGAAGCGGGTGGCCGGCGGCCATCGCAACGGCAAGCCCGTA GTCTTTTTCGAGACCACCTCGGCACAGATGCGTGACGGCACGCTGTGGAACCATCTGGAGCACTCGCTCAAGGCGGCGGG TATCGCGGTGGGTCCACGCTCCCAGGACGTGTACCGCCGGGCCATCGCCAGCTTCGGGCCGATCGAAGGACTCGAGCAGC TCATCATGGACTTCGTGCTGCGCTTCAAGGACTCGGGCCTCACGGAAGGGGAGGTCTTGCAGGAAGCAAAGCAGCAACCC AACTCGTGGCGCGCACTACTCTTCCTGAAGGTGGCTTTCCCCGTGTTCCACGCCTACCAGCAGGCGTTGCGGGATGCAGG CAAGATCGACTACGCCGACATGCTGCGCGAAGCCCTGGCCGCACTGCGCGATGGCCGCGTCAAGACGCCGTACCGATTCG TGCTGGTGGACGAATTCCAGGACATCGCACGTCTGCGCGCGGACCTGGTGAAGTCCGTCCTGGACCAAGCGCCCTACGAA TCGATCGTCTTCTGCGTGGGCGACGACTGGCAGACGATCAATCGGTTCTCCGGTTCCGACGTCGGCATCTTCAAGAACAT CGGAAACCACTTCGGGCGCCACGAACGCCAGTTGATGCTGTCGCGCACGTTCCGCTGCTCCAGCGGGATCGCCACGCTGG CCCGCGAGTTGGTGCTGAAGAACGACAACCAGTTCGACAAGCCAGTGCAGGCGAGGCCGGACCGACTTTCCCACTGTGTG CGCGTGGTTCTCCACAAGCCCGGCGCCGAGCACCGGATGCCGGCGCTGGAGACGCAGTTGGCAGCATTGATCGAGACCGG TAAGGACCTCGGCATCGCGCTGCCGTCCGTGCAGATCCTCGCCCGCACGACCGTCAAAACGACGGCGCCGCTGGGCTTGG ATTCAAAGGATGCGATCAATGCGCTGAAAGCCAGGTACACCGGCCAGTTGGAGGTGGAGGTCATGAGCCTGCATGGCTCC AAAGGGCTCGAGGCGGATTTCGTGGTGCTGGTGGGATTCGATTCCGGGTTCAGGGGTTTCCCGGACGAGCGCGCGCCGGA GCCGCTACTGGACCTCGTCTTGCCCAAACTCTCCCACGAGAACGAAGAAGAACGCCGCTTGCTCTATGTGGGCCTTACGC GGGCCAAACACCAGGTGATCGTCCTGGCCAACGGGGATGCACCGAGCGAATACGTCCTGGAACTATCAGCGCTCTCGGAG CACCACGCCTTCATCGACTGGATCAACCTGGGCGCCCAACGCACAGATTGCCCACGGTGCAAGGTTGGATCGCTACAGCC GCCTCGCAACAGTGAGCTCAAACTCGTCTGCTCCCGCTCGGCGCGATGCGGCTATCGAGGCCAGATCCCCCGGCGTCAGG CGCCGACGGTCAACTCCTGA
Upstream 100 bases:
>100_bases GGACGTGTGGTTTTGCTTGCGCAAGCCGTTGAGCCTGGAGATTTCCGCCAAAGCCGCGTCGATGGCAGGGCTGGAAGTTC GGTACTGGCAGTTGTCGGCG
Downstream 100 bases:
>100_bases AGGGTGGCGATCCTGCTGTAAACACCCTTCTGCCATTCGGCGATCACGGCGATGAGGTCCGTGCAGGGAGCGGTAGGGAG CGGGTCCAGGAAGTCCCGGC
Product: helicase IV
Products: NA
Alternate protein names: 75 kDa helicase [H]
Number of amino acids: Translated: 939; Mature: 939
Protein sequence:
>939_residues MQDRAPSWFLPRWLDRGHVVLTYRSGKEEYQRSFVLRGAARAQARKDILQRAHRELTRALDAADRALVPIRSDIERTYRS DRYVRHSQAARITSNHADMARKVAPVLDALHRHPLLAPSDRELARSLKDELADLAKRVNKPEASRTEHNEQYLAYQIEAE ADYFNAVESSPLTPEQTAAALVFEDATLVVAAAGSGKSSCIVGKIGFALKSGLFQDHEILALAYNKKAAKSLDERLSKKL SKAIGRKVAVASKTFHSFGLSVMVEANGEGIRPRVLKEEAGEEGRFLRTVIDRLKDEDLPFQQALADWLLFAPFEDPSPS GIAGNLEDCEKRYEECCRQRIKAKREEGKKSYEPTIPTLDPAIHVRSLEERSIVNWLFLRGIPVGYETPDWDGAKLLGLG VSESTKRQRPYKPDFTYCQTQQLSNGTQREVRVIHEHFALDGNGRAPAWMGGAEYEAQARSKRAMFKKRVAGGHRNGKPV VFFETTSAQMRDGTLWNHLEHSLKAAGIAVGPRSQDVYRRAIASFGPIEGLEQLIMDFVLRFKDSGLTEGEVLQEAKQQP NSWRALLFLKVAFPVFHAYQQALRDAGKIDYADMLREALAALRDGRVKTPYRFVLVDEFQDIARLRADLVKSVLDQAPYE SIVFCVGDDWQTINRFSGSDVGIFKNIGNHFGRHERQLMLSRTFRCSSGIATLARELVLKNDNQFDKPVQARPDRLSHCV RVVLHKPGAEHRMPALETQLAALIETGKDLGIALPSVQILARTTVKTTAPLGLDSKDAINALKARYTGQLEVEVMSLHGS KGLEADFVVLVGFDSGFRGFPDERAPEPLLDLVLPKLSHENEEERRLLYVGLTRAKHQVIVLANGDAPSEYVLELSALSE HHAFIDWINLGAQRTDCPRCKVGSLQPPRNSELKLVCSRSARCGYRGQIPRRQAPTVNS
Sequences:
>Translated_939_residues MQDRAPSWFLPRWLDRGHVVLTYRSGKEEYQRSFVLRGAARAQARKDILQRAHRELTRALDAADRALVPIRSDIERTYRS DRYVRHSQAARITSNHADMARKVAPVLDALHRHPLLAPSDRELARSLKDELADLAKRVNKPEASRTEHNEQYLAYQIEAE ADYFNAVESSPLTPEQTAAALVFEDATLVVAAAGSGKSSCIVGKIGFALKSGLFQDHEILALAYNKKAAKSLDERLSKKL SKAIGRKVAVASKTFHSFGLSVMVEANGEGIRPRVLKEEAGEEGRFLRTVIDRLKDEDLPFQQALADWLLFAPFEDPSPS GIAGNLEDCEKRYEECCRQRIKAKREEGKKSYEPTIPTLDPAIHVRSLEERSIVNWLFLRGIPVGYETPDWDGAKLLGLG VSESTKRQRPYKPDFTYCQTQQLSNGTQREVRVIHEHFALDGNGRAPAWMGGAEYEAQARSKRAMFKKRVAGGHRNGKPV VFFETTSAQMRDGTLWNHLEHSLKAAGIAVGPRSQDVYRRAIASFGPIEGLEQLIMDFVLRFKDSGLTEGEVLQEAKQQP NSWRALLFLKVAFPVFHAYQQALRDAGKIDYADMLREALAALRDGRVKTPYRFVLVDEFQDIARLRADLVKSVLDQAPYE SIVFCVGDDWQTINRFSGSDVGIFKNIGNHFGRHERQLMLSRTFRCSSGIATLARELVLKNDNQFDKPVQARPDRLSHCV RVVLHKPGAEHRMPALETQLAALIETGKDLGIALPSVQILARTTVKTTAPLGLDSKDAINALKARYTGQLEVEVMSLHGS KGLEADFVVLVGFDSGFRGFPDERAPEPLLDLVLPKLSHENEEERRLLYVGLTRAKHQVIVLANGDAPSEYVLELSALSE HHAFIDWINLGAQRTDCPRCKVGSLQPPRNSELKLVCSRSARCGYRGQIPRRQAPTVNS >Mature_939_residues MQDRAPSWFLPRWLDRGHVVLTYRSGKEEYQRSFVLRGAARAQARKDILQRAHRELTRALDAADRALVPIRSDIERTYRS DRYVRHSQAARITSNHADMARKVAPVLDALHRHPLLAPSDRELARSLKDELADLAKRVNKPEASRTEHNEQYLAYQIEAE ADYFNAVESSPLTPEQTAAALVFEDATLVVAAAGSGKSSCIVGKIGFALKSGLFQDHEILALAYNKKAAKSLDERLSKKL SKAIGRKVAVASKTFHSFGLSVMVEANGEGIRPRVLKEEAGEEGRFLRTVIDRLKDEDLPFQQALADWLLFAPFEDPSPS GIAGNLEDCEKRYEECCRQRIKAKREEGKKSYEPTIPTLDPAIHVRSLEERSIVNWLFLRGIPVGYETPDWDGAKLLGLG VSESTKRQRPYKPDFTYCQTQQLSNGTQREVRVIHEHFALDGNGRAPAWMGGAEYEAQARSKRAMFKKRVAGGHRNGKPV VFFETTSAQMRDGTLWNHLEHSLKAAGIAVGPRSQDVYRRAIASFGPIEGLEQLIMDFVLRFKDSGLTEGEVLQEAKQQP NSWRALLFLKVAFPVFHAYQQALRDAGKIDYADMLREALAALRDGRVKTPYRFVLVDEFQDIARLRADLVKSVLDQAPYE SIVFCVGDDWQTINRFSGSDVGIFKNIGNHFGRHERQLMLSRTFRCSSGIATLARELVLKNDNQFDKPVQARPDRLSHCV RVVLHKPGAEHRMPALETQLAALIETGKDLGIALPSVQILARTTVKTTAPLGLDSKDAINALKARYTGQLEVEVMSLHGS KGLEADFVVLVGFDSGFRGFPDERAPEPLLDLVLPKLSHENEEERRLLYVGLTRAKHQVIVLANGDAPSEYVLELSALSE HHAFIDWINLGAQRTDCPRCKVGSLQPPRNSELKLVCSRSARCGYRGQIPRRQAPTVNS
Specific function: Helicase IV catalyzes the unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand in a reaction that is dependent upon the hydrolysis of ATP [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787196, Length=305, Percent_Identity=32.4590163934426, Blast_Score=158, Evalue=2e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 - InterPro: IPR022161 - InterPro: IPR003661 [H]
Pfam domain/function: PF12462 Nucleolin_N; PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 105196; Mature: 105196
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDRAPSWFLPRWLDRGHVVLTYRSGKEEYQRSFVLRGAARAQARKDILQRAHRELTRAL CCCCCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAADRALVPIRSDIERTYRSDRYVRHSQAARITSNHADMARKVAPVLDALHRHPLLAPSD HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCH RELARSLKDELADLAKRVNKPEASRTEHNEQYLAYQIEAEADYFNAVESSPLTPEQTAAA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHEE LVFEDATLVVAAAGSGKSSCIVGKIGFALKSGLFQDHEILALAYNKKAAKSLDERLSKKL EEEECCEEEEEECCCCCCCEEEEHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHH SKAIGRKVAVASKTFHSFGLSVMVEANGEGIRPRVLKEEAGEEGRFLRTVIDRLKDEDLP HHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCC FQQALADWLLFAPFEDPSPSGIAGNLEDCEKRYEECCRQRIKAKREEGKKSYEPTIPTLD HHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PAIHVRSLEERSIVNWLFLRGIPVGYETPDWDGAKLLGLGVSESTKRQRPYKPDFTYCQT CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHCCCCCCCCCCHHHH QQLSNGTQREVRVIHEHFALDGNGRAPAWMGGAEYEAQARSKRAMFKKRVAGGHRNGKPV HHHCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE VFFETTSAQMRDGTLWNHLEHSLKAAGIAVGPRSQDVYRRAIASFGPIEGLEQLIMDFVL EEEECCCCCCCCCHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHH RFKDSGLTEGEVLQEAKQQPNSWRALLFLKVAFPVFHAYQQALRDAGKIDYADMLREALA HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH ALRDGRVKTPYRFVLVDEFQDIARLRADLVKSVLDQAPYESIVFCVGDDWQTINRFSGSD HHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCC VGIFKNIGNHFGRHERQLMLSRTFRCSSGIATLARELVLKNDNQFDKPVQARPDRLSHCV CHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH RVVLHKPGAEHRMPALETQLAALIETGKDLGIALPSVQILARTTVKTTAPLGLDSKDAIN HHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCCCCHHHHH ALKARYTGQLEVEVMSLHGSKGLEADFVVLVGFDSGFRGFPDERAPEPLLDLVLPKLSHE HHHHHCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCC NEEERRLLYVGLTRAKHQVIVLANGDAPSEYVLELSALSEHHAFIDWINLGAQRTDCPRC CCHHCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC KVGSLQPPRNSELKLVCSRSARCGYRGQIPRRQAPTVNS CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MQDRAPSWFLPRWLDRGHVVLTYRSGKEEYQRSFVLRGAARAQARKDILQRAHRELTRAL CCCCCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAADRALVPIRSDIERTYRSDRYVRHSQAARITSNHADMARKVAPVLDALHRHPLLAPSD HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCH RELARSLKDELADLAKRVNKPEASRTEHNEQYLAYQIEAEADYFNAVESSPLTPEQTAAA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHEE LVFEDATLVVAAAGSGKSSCIVGKIGFALKSGLFQDHEILALAYNKKAAKSLDERLSKKL EEEECCEEEEEECCCCCCCEEEEHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHH SKAIGRKVAVASKTFHSFGLSVMVEANGEGIRPRVLKEEAGEEGRFLRTVIDRLKDEDLP HHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCC FQQALADWLLFAPFEDPSPSGIAGNLEDCEKRYEECCRQRIKAKREEGKKSYEPTIPTLD HHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PAIHVRSLEERSIVNWLFLRGIPVGYETPDWDGAKLLGLGVSESTKRQRPYKPDFTYCQT CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHCCCCCCCCCCHHHH QQLSNGTQREVRVIHEHFALDGNGRAPAWMGGAEYEAQARSKRAMFKKRVAGGHRNGKPV HHHCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE VFFETTSAQMRDGTLWNHLEHSLKAAGIAVGPRSQDVYRRAIASFGPIEGLEQLIMDFVL EEEECCCCCCCCCHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHH RFKDSGLTEGEVLQEAKQQPNSWRALLFLKVAFPVFHAYQQALRDAGKIDYADMLREALA HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH ALRDGRVKTPYRFVLVDEFQDIARLRADLVKSVLDQAPYESIVFCVGDDWQTINRFSGSD HHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCC VGIFKNIGNHFGRHERQLMLSRTFRCSSGIATLARELVLKNDNQFDKPVQARPDRLSHCV CHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH RVVLHKPGAEHRMPALETQLAALIETGKDLGIALPSVQILARTTVKTTAPLGLDSKDAIN HHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCCCCHHHHH ALKARYTGQLEVEVMSLHGSKGLEADFVVLVGFDSGFRGFPDERAPEPLLDLVLPKLSHE HHHHHCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCC NEEERRLLYVGLTRAKHQVIVLANGDAPSEYVLELSALSEHHAFIDWINLGAQRTDCPRC CCHHCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC KVGSLQPPRNSELKLVCSRSARCGYRGQIPRRQAPTVNS CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2542273; 8905232; 9278503 [H]