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The map label for this gene is yddU [C]

Identifier: 21242887

GI number: 21242887

Start: 2521566

End: 2523377

Strand: Direct

Name: yddU [C]

Synonym: XAC2152

Alternate gene names: 21242887

Gene position: 2521566-2523377 (Clockwise)

Preceding gene: 21242885

Following gene: 21242894

Centisome position: 48.72

GC content: 62.25

Gene sequence:

>1812_bases
GTGATCTTCGACACGGAACCTGACGCCATGACGCTAGCCCCGGACGACAAACCGCAGGATCGCCACTTCGACTGGTCAGG
CGTGCCGATCGACCTGGGTGGCATGGAGCCACTCGAGCAAATCGCACGATTGCTTTGCCATGCCCTGGTTGCGCCGGCTG
CTGCGCTGACCATCACCGAGGGCGGGCGCCTACGCGTGCTGGCAGCGCGTGGTATCAGCAGCAGTCATGTCGAGCAGGCC
ATGGAGTTGTGCAAGCAGGTTCCGCCAGCGCCCAATGGCGTGACCGAGTTGATCGAGCATGCAACGCTTGCGCAAATCAA
ACTGGGCGATGCCGCCTTCCCCGGCTTGCCTGCGCGTTTTATCGCCTGTGTGCCGGTGGGTGCTCCGCAGACAGGTATTT
CCGGCACCCTGTGCGTGATCGACACACGCGAGCGCCGGCTGGCGAGCCAGGAGCACCAGCAACTGCTGATGTTCGCCAAC
GTGGCTGCCGCACAACTGGAATTGCAGTTCGGTGCAGGCAGGCGCGAACCGCATAGCGGCTTGCTCAATACGCGCCAGCT
GCAATCGGATCTGGACGCCCTCGCCTTCGGCAGTCATAGCGTGCCCACCATTGCTGCATTTATTGAGGTCTACGATACCC
AGGCCGCCAACGAGGCGCGCCAGGCGCTGGGCATGCAGCCGTTGGAAGAATTGGTTCGCCACGCCAGCTATGTGTTGACG
CGCGCTTTGCGCGGCAAGGCCACGGTGTACCACGTGGCCTCGATGCGCTTTGCGTTCTTCCTGCTCAACTCCGCGCCGGA
CGAGATGGAAGACCTGCTGCTGGATCTGCGCGACATGCTGCACAAGCCGGTGGATGCCGCCGGCGTACCGATGTCGCTGA
CCTTTCATGCCGGTGTGGTGCGCTTTGCTCCGCAGCAGCCGGACACAAACGACGTGATGCGCAAGGGCCTGGTGGCGCTG
GGCGATGCCATCAATAACCATGCCATCGTGTGCTGGTATAGCGCTTCGCACGACGATGCGATCCAACGCTCCTACCGCTT
GGCACTGGATGCCGAACAGGCCCTGGATGCCGGTGATTTCCGGCTGGTGTTCCAGCCGCGCATCGATCTTGAAGACCTAT
CGGTGACCGGCTTCGAGGCGTTGCTGCGCTGGAATCACGCCAGCATGGGCCCGATCGGTCCCGACGAATTCATCCCGCTC
TTCGAAAAAACCGCACTGATGTGCACGGTCACCAATTGGGTGATCGAAAGCGCCTTGGTACAGCTGGCGAAGTGGCGTGC
CCAGGGCTTGGATTTTTCCATGTCCATCAACCTGTCCTCGCGCGATTTCGGCAACATCAATCTGGCAGCCGATGTGATCA
ACCGCTGCAAGGATCTGGCGATTCCCACCACATGCATCGAGCTGGAGATCACCGAAGGCCGCTGGCTGCGCAGCAATGTC
GAAGCGGTGCCGCGGCTGCGGGCGTTGCGCGATGCAGGCGTGAGCGTGGCCATCGACGATTTCGGCACCGGTTATAGCAA
TTTCGGCTATCTCACCGAGTTGCCGGTCAATGTGCTCAAGCTGGACCGGTCGCTGGTGACTGGCATCGCCACCAAAACCG
GCATGCAGATGCGCGCCGAGGCGGTAGTGCGCCTGGCCAACGCATTGGGTTATCGCACCGTGGCCGAGGGCATCGAGCAC
GCCGATGAGATCGCCTTGCTGCGGAGTTGGGGATGCGACGAGGCGCAGGGGTATCTGCTGGCCAAACCCATGGAAGCGCA
CCTGGTGGCCGATTACGTCAAACAAACCGCGGCGCTGCGGCGCCTGCCGTAA

Upstream 100 bases:

>100_bases
TTACCGCTTGGAACCACCCAGACGCTGATAGGGAATGTACGAATCGTGCAGACCTCATCACCTATCGATGACCCCGGTTT
GTTTCTAGTAGAGGTGCAGT

Downstream 100 bases:

>100_bases
AGCCGCGGCGGCGCGCGGAGCCTGCCGGGCAGGCAATCGCACCGCGCCGCTGTGCGGTTGCATGCGCGATGCCTTGTGAT
GCGATGCACGTCCGAACTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 603; Mature: 603

Protein sequence:

>603_residues
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITEGGRLRVLAARGISSSHVEQA
MELCKQVPPAPNGVTELIEHATLAQIKLGDAAFPGLPARFIACVPVGAPQTGISGTLCVIDTRERRLASQEHQQLLMFAN
VAAAQLELQFGAGRREPHSGLLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVVRFAPQQPDTNDVMRKGLVAL
GDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALDAGDFRLVFQPRIDLEDLSVTGFEALLRWNHASMGPIGPDEFIPL
FEKTALMCTVTNWVIESALVQLAKWRAQGLDFSMSINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAEAVVRLANALGYRTVAEGIEH
ADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTAALRRLP

Sequences:

>Translated_603_residues
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITEGGRLRVLAARGISSSHVEQA
MELCKQVPPAPNGVTELIEHATLAQIKLGDAAFPGLPARFIACVPVGAPQTGISGTLCVIDTRERRLASQEHQQLLMFAN
VAAAQLELQFGAGRREPHSGLLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVVRFAPQQPDTNDVMRKGLVAL
GDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALDAGDFRLVFQPRIDLEDLSVTGFEALLRWNHASMGPIGPDEFIPL
FEKTALMCTVTNWVIESALVQLAKWRAQGLDFSMSINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAEAVVRLANALGYRTVAEGIEH
ADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTAALRRLP
>Mature_603_residues
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITEGGRLRVLAARGISSSHVEQA
MELCKQVPPAPNGVTELIEHATLAQIKLGDAAFPGLPARFIACVPVGAPQTGISGTLCVIDTRERRLASQEHQQLLMFAN
VAAAQLELQFGAGRREPHSGLLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVVRFAPQQPDTNDVMRKGLVAL
GDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALDAGDFRLVFQPRIDLEDLSVTGFEALLRWNHASMGPIGPDEFIPL
FEKTALMCTVTNWVIESALVQLAKWRAQGLDFSMSINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAEAVVRLANALGYRTVAEGIEH
ADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTAALRRLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=27.039627039627, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=36.0323886639676, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI1787541, Length=409, Percent_Identity=24.6943765281174, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI226510982, Length=258, Percent_Identity=31.7829457364341, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI1788502, Length=344, Percent_Identity=29.9418604651163, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=30.9012875536481, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=33.1967213114754, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1786507, Length=251, Percent_Identity=29.0836653386454, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1787055, Length=279, Percent_Identity=28.3154121863799, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=29.3617021276596, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87082096, Length=230, Percent_Identity=32.1739130434783, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788849, Length=238, Percent_Identity=29.8319327731092, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 65883; Mature: 65883

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITE
CCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHEEEEEC
GGRLRVLAARGISSSHVEQAMELCKQVPPAPNGVTELIEHATLAQIKLGDAAFPGLPARF
CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCHH
IACVPVGAPQTGISGTLCVIDTRERRLASQEHQQLLMFANVAAAQLELQFGAGRREPHSG
EEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
LLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVV
HHHCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEE
RFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALDAGDF
EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHEECHHHHCCCCCE
RLVFQPRIDLEDLSVTGFEALLRWNHASMGPIGPDEFIPLFEKTALMCTVTNWVIESALV
EEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEHHHHHHHHHHHH
QLAKWRAQGLDFSMSINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
HHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAE
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
AVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTAALR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH
RLP
CCC
>Mature Secondary Structure
MIFDTEPDAMTLAPDDKPQDRHFDWSGVPIDLGGMEPLEQIARLLCHALVAPAAALTITE
CCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHEEEEEC
GGRLRVLAARGISSSHVEQAMELCKQVPPAPNGVTELIEHATLAQIKLGDAAFPGLPARF
CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCCCCCCCCHH
IACVPVGAPQTGISGTLCVIDTRERRLASQEHQQLLMFANVAAAQLELQFGAGRREPHSG
EEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
LLNTRQLQSDLDALAFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHASYVLT
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RALRGKATVYHVASMRFAFFLLNSAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTFHAGVV
HHHCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEE
RFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEQALDAGDF
EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHEECHHHHCCCCCE
RLVFQPRIDLEDLSVTGFEALLRWNHASMGPIGPDEFIPLFEKTALMCTVTNWVIESALV
EEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEHHHHHHHHHHHH
QLAKWRAQGLDFSMSINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWLRSNV
HHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
EAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKTGMQMRAE
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCHHHHHH
AVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQTAALR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH
RLP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]