| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is comA [H]
Identifier: 21242823
GI number: 21242823
Start: 2431491
End: 2434040
Strand: Direct
Name: comA [H]
Synonym: XAC2084
Alternate gene names: 21242823
Gene position: 2431491-2434040 (Clockwise)
Preceding gene: 21242821
Following gene: 21242824
Centisome position: 46.98
GC content: 68.51
Gene sequence:
>2550_bases ATGATGGTGACCGACAGCATGGAGGTGTCAGCGCACACGGCACCGCCGCAGATGGGATCGGCGGTGGTCATCGCGGCCGC GTTATTGCTGGGCGTGGTGGCGTGCGCCTGGTCGCCCATACTGCTGCCGCGCATGGTTTATGTCGGCTGCGTGTGCGTTG CGTTGCTGGGCAGCGGCGCGACGGTGTGGCTGCGCCCGTGCTGGAGTGCGCTATTGCTGGCCGGCGCTGCGGCACTTCTT GGATTCGGAGCGATGGGATGGCAGGTGACTGGCGCGCTGCAGGCGCAGTTGCTTCCGCAGGATGAAACACGCGATGCCAC CGTGCGCGGGCAGATTGTCGGGCTACCGATCGCCGAGCAACGCCGTACCCGCTTTCAGCTGCGCGTGGACGAGGCTCCGG CCCAGCCGGCGGCACTGCGTGGCAAGCTCCTGCAGGTGGCCTGGTACGACGACTTTGATGCCGAGCGCATCGGCCCGCGC GCGGCGCTACATGCAGGTGCGCGCTGGCAGCTGCGGCTCAAGCTGCGTGCGCCACGCGGCTTGCGCAATCCCGGAGGCTT CGATGCCGAGCGCCAGGCACTGGCGCAGCGCATCGCTGCGACGGGCTATGTGCGCATCCCTGCAACCGCACACCAGACCG TACCGCCGCAAGGCGTGGATGCCTGGCGCGAACGGATGTCGCAACGCATCGCCGAGCGTGTCGGCGGCCCCTCTGCGCCG TACCTGCGGGCGCTCGCGCTCGGAGATACCCGGGGGCTGGACGATACGGCATGGGCAACGTTGCGCGCGACCGGGCTCAG CCATCTGATCGCCATCTCTGGATTTCATGTCGGGCTGGTCGGGGCATTCTTCGCGCTGCTGATCGCTGGCATATGGCGCT GGCAGCCGCGACTGGGCACATTCATGCCGCGTCTGCATGCGGCATCGATTGCCGCGCTACTCGGCGCTGCGGCCTACGCG CTACTGGCTGGCCTGGCGCTGCCGACGGTACGCACCGTATTGATGATTGCGGTGGTGGCCCTCGCCAGGGTGCTGCGGCG ACGCGCCTCGACCGCGCATGTGCTTTCGCTCGCCTTGTTGGCGGTGGTGCTGTGGGATCCGCTCAGCGTGCTGGTTGCTG GCTTCTGGCTCAGCTTCGCCGGCGTGGCATGGCTGGTCTGGTGCCTGCCGTCTGACGATCGCGCCATCGTGCGCGGCTTC CTGTCTGCGCAGACCGTGGCCACCGTTGGCCTGCTGCCGTTGACGGTCAGCTTGTTCGGGCAGGCGTCGCTGGTCGGGCC ATTCGCCAATTTGGTCGCCATTCCGTGGTGGACTTTCGTGGTGGTACCGCTGTGCCTGTTGGGGACCGCACTTGAGGCGA TCTACCCGGGGACCGGCATGTGGGCATGGCAGCTTGCGGGCTGGTGCTTTGAGCTGACCTGGCCGGGGTTCGTCTGGCTT GGGCAGACCGCGTTGGCGTTGTGGTGGGTGCCCGAGTCCGATGGGGTTGCCCTGATCGCCGCCTTGCTCGGTGCGTTCTG GCTGTTGCTGCCGCGCGCGACGCCGGGTAAATCGTTGGCGGCGCTGCTGTGGTTGCCGCTGCTCTGGCCGGATCGCGAGC TACCGGCCGCAGGCGAGGCGGAAGTGCAGGTGCTGGATGTGGGTCAGGGCTTGGCGGTGCTGGTGCGCACGCAACGCCAT GCGCTGTTGTTCGATACCGGTCCGGCGGTGCGCGACGGCTTCGATGCCGGCGAGCGCGTCGTGCTGCCGGCGTTGCGCGC GCTTGGTGTGCGCCGGCTGGACGCCATCGTGCTCAGCCATGCCGATGCCGATCATGCTGGTGGCTATGCCGCAGTGCGCA CGGGGCTGCCGGTGGCACGCACGGCTGCGCCACCGGGTGCGCCGTTGGACGTCACCGCACGCTGCCGCGCCGGGCAGCAG TGGGAGTGGGACGGGGTGCGCTTTCGCTTCCTGCATCCCGGCGCGGGTTTTCCTTACCTGCGCAACCAATCCAGCTGCGT ACTGCGGGTCGAAACCGCGTATGCGAGCGCACTGTTGCCGGGCGATATTGGCGACATCGTCGAGCGCCGCCTGCTGCGCG GGCACGCCGCGGACCTGCGTGCCGAGCTGGTGATCGTCCCGCACCACGGCAGCGCCGATGGCTCGCAAGCCGGTTTCATC GCCGCCACCGGAGCACGCCTGGCGTTGGTGTCGTCCGGTCATGGCAACAGATTCGGGCATCCGCGCGCCGAGGTCGTGCA ACGTTGGAAGTCAGGCGGGGCAGAGGTGTTGGACACCGCCCAGGCGGGAGCGATCCGGGTTTGGCTCGGTGCCGCGGGCC TGCAACTGCGCGAGCGACGGCGCTGGCAGCCGCGGCTATGGGATGCTGCGGAACGGCGGCGGTCGGCTGCTATCCTATCG GTCAGCGAACAGGCGGCCGCGTTGCCGGAGGAATCGAATCGTGTTGGAGCTGGTCAAGGCAGGCGGTTGGCCGATGGTGC CGTTGCTGTTGCTGGGCGTGATCGCCCTGGCGATCGTGCTGGAGCGTATGTGGAGCCTGCGCCGCAATGA
Upstream 100 bases:
>100_bases GACCGCCGCAGCAGTGTTCTTCCTACCCAGGCTTGGGTAGATCTCCGCTGTGCGTGGAAGGTGTCGCGATCTAAGGTGAA GACGTTGATCGATAGGGTCC
Downstream 100 bases:
>100_bases GGTGACGCCGCCGGGCCTGGGTGAAGAAGTGCGCAATTGGGCCGCGCGCGGCAATCTGGATCCCACCCACATCGAGTCGC TGCGCCGCAATTCGCCGTTG
Product: competence protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MMVTDSMEVSAHTAPPQMGSAVVIAAALLLGVVACAWSPILLPRMVYVGCVCVALLGSGATVWLRPCWSALLLAGAAALL GFGAMGWQVTGALQAQLLPQDETRDATVRGQIVGLPIAEQRRTRFQLRVDEAPAQPAALRGKLLQVAWYDDFDAERIGPR AALHAGARWQLRLKLRAPRGLRNPGGFDAERQALAQRIAATGYVRIPATAHQTVPPQGVDAWRERMSQRIAERVGGPSAP YLRALALGDTRGLDDTAWATLRATGLSHLIAISGFHVGLVGAFFALLIAGIWRWQPRLGTFMPRLHAASIAALLGAAAYA LLAGLALPTVRTVLMIAVVALARVLRRRASTAHVLSLALLAVVLWDPLSVLVAGFWLSFAGVAWLVWCLPSDDRAIVRGF LSAQTVATVGLLPLTVSLFGQASLVGPFANLVAIPWWTFVVVPLCLLGTALEAIYPGTGMWAWQLAGWCFELTWPGFVWL GQTALALWWVPESDGVALIAALLGAFWLLLPRATPGKSLAALLWLPLLWPDRELPAAGEAEVQVLDVGQGLAVLVRTQRH ALLFDTGPAVRDGFDAGERVVLPALRALGVRRLDAIVLSHADADHAGGYAAVRTGLPVARTAAPPGAPLDVTARCRAGQQ WEWDGVRFRFLHPGAGFPYLRNQSSCVLRVETAYASALLPGDIGDIVERRLLRGHAADLRAELVIVPHHGSADGSQAGFI AATGARLALVSSGHGNRFGHPRAEVVQRWKSGGAEVLDTAQAGAIRVWLGAAGLQLRERRRWQPRLWDAAERRRSAAILS VSEQAAALPEESNRVGAGQGRRLADGAVAVAGRDRPGDRAGAYVEPAPQ
Sequences:
>Translated_849_residues MMVTDSMEVSAHTAPPQMGSAVVIAAALLLGVVACAWSPILLPRMVYVGCVCVALLGSGATVWLRPCWSALLLAGAAALL GFGAMGWQVTGALQAQLLPQDETRDATVRGQIVGLPIAEQRRTRFQLRVDEAPAQPAALRGKLLQVAWYDDFDAERIGPR AALHAGARWQLRLKLRAPRGLRNPGGFDAERQALAQRIAATGYVRIPATAHQTVPPQGVDAWRERMSQRIAERVGGPSAP YLRALALGDTRGLDDTAWATLRATGLSHLIAISGFHVGLVGAFFALLIAGIWRWQPRLGTFMPRLHAASIAALLGAAAYA LLAGLALPTVRTVLMIAVVALARVLRRRASTAHVLSLALLAVVLWDPLSVLVAGFWLSFAGVAWLVWCLPSDDRAIVRGF LSAQTVATVGLLPLTVSLFGQASLVGPFANLVAIPWWTFVVVPLCLLGTALEAIYPGTGMWAWQLAGWCFELTWPGFVWL GQTALALWWVPESDGVALIAALLGAFWLLLPRATPGKSLAALLWLPLLWPDRELPAAGEAEVQVLDVGQGLAVLVRTQRH ALLFDTGPAVRDGFDAGERVVLPALRALGVRRLDAIVLSHADADHAGGYAAVRTGLPVARTAAPPGAPLDVTARCRAGQQ WEWDGVRFRFLHPGAGFPYLRNQSSCVLRVETAYASALLPGDIGDIVERRLLRGHAADLRAELVIVPHHGSADGSQAGFI AATGARLALVSSGHGNRFGHPRAEVVQRWKSGGAEVLDTAQAGAIRVWLGAAGLQLRERRRWQPRLWDAAERRRSAAILS VSEQAAALPEESNRVGAGQGRRLADGAVAVAGRDRPGDRAGAYVEPAPQ >Mature_849_residues MMVTDSMEVSAHTAPPQMGSAVVIAAALLLGVVACAWSPILLPRMVYVGCVCVALLGSGATVWLRPCWSALLLAGAAALL GFGAMGWQVTGALQAQLLPQDETRDATVRGQIVGLPIAEQRRTRFQLRVDEAPAQPAALRGKLLQVAWYDDFDAERIGPR AALHAGARWQLRLKLRAPRGLRNPGGFDAERQALAQRIAATGYVRIPATAHQTVPPQGVDAWRERMSQRIAERVGGPSAP YLRALALGDTRGLDDTAWATLRATGLSHLIAISGFHVGLVGAFFALLIAGIWRWQPRLGTFMPRLHAASIAALLGAAAYA LLAGLALPTVRTVLMIAVVALARVLRRRASTAHVLSLALLAVVLWDPLSVLVAGFWLSFAGVAWLVWCLPSDDRAIVRGF LSAQTVATVGLLPLTVSLFGQASLVGPFANLVAIPWWTFVVVPLCLLGTALEAIYPGTGMWAWQLAGWCFELTWPGFVWL GQTALALWWVPESDGVALIAALLGAFWLLLPRATPGKSLAALLWLPLLWPDRELPAAGEAEVQVLDVGQGLAVLVRTQRH ALLFDTGPAVRDGFDAGERVVLPALRALGVRRLDAIVLSHADADHAGGYAAVRTGLPVARTAAPPGAPLDVTARCRAGQQ WEWDGVRFRFLHPGAGFPYLRNQSSCVLRVETAYASALLPGDIGDIVERRLLRGHAADLRAELVIVPHHGSADGSQAGFI AATGARLALVSSGHGNRFGHPRAEVVQRWKSGGAEVLDTAQAGAIRVWLGAAGLQLRERRRWQPRLWDAAERRRSAAILS VSEQAAALPEESNRVGAGQGRRLADGAVAVAGRDRPGDRAGAYVEPAPQ
Specific function: Essential for natural transformation. Could be a transporter involved in DNA uptake [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, H.influenzae REC2, and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=643, Percent_Identity=29.5489891135303, Blast_Score=212, Evalue=1e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 90599; Mature: 90599
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMVTDSMEVSAHTAPPQMGSAVVIAAALLLGVVACAWSPILLPRMVYVGCVCVALLGSGA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC TVWLRPCWSALLLAGAAALLGFGAMGWQVTGALQAQLLPQDETRDATVRGQIVGLPIAEQ EEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHEEECCCCCCCCCEEEEEEEECCCHHH RRTRFQLRVDEAPAQPAALRGKLLQVAWYDDFDAERIGPRAALHAGARWQLRLKLRAPRG CCCEEEEEECCCCCCCHHHCCCEEEEEECCCCCHHHCCCHHHHCCCCEEEEEEEEECCCC LRNPGGFDAERQALAQRIAATGYVRIPATAHQTVPPQGVDAWRERMSQRIAERVGGPSAP CCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC YLRALALGDTRGLDDTAWATLRATGLSHLIAISGFHVGLVGAFFALLIAGIWRWQPRLGT HHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH FMPRLHAASIAALLGAAAYALLAGLALPTVRTVLMIAVVALARVLRRRASTAHVLSLALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVLWDPLSVLVAGFWLSFAGVAWLVWCLPSDDRAIVRGFLSAQTVATVGLLPLTVSLFG HHHHHCHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC QASLVGPFANLVAIPWWTFVVVPLCLLGTALEAIYPGTGMWAWQLAGWCFELTWPGFVWL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEECCCCEEEE GQTALALWWVPESDGVALIAALLGAFWLLLPRATPGKSLAALLWLPLLWPDRELPAAGEA CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC EVQVLDVGQGLAVLVRTQRHALLFDTGPAVRDGFDAGERVVLPALRALGVRRLDAIVLSH EEEEEECCCCEEEEEECCCCEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC ADADHAGGYAAVRTGLPVARTAAPPGAPLDVTARCRAGQQWEWDGVRFRFLHPGAGFPYL CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCEEEEEECCCCCCCCC RNQSSCVLRVETAYASALLPGDIGDIVERRLLRGHAADLRAELVIVPHHGSADGSQAGFI CCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEE AATGARLALVSSGHGNRFGHPRAEVVQRWKSGGAEVLDTAQAGAIRVWLGAAGLQLRERR EECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCHHHHHHC RWQPRLWDAAERRRSAAILSVSEQAAALPEESNRVGAGQGRRLADGAVAVAGRDRPGDRA CCCCCHHHHHHHHHHHHEEEECHHHHCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCC GAYVEPAPQ CCCCCCCCC >Mature Secondary Structure MMVTDSMEVSAHTAPPQMGSAVVIAAALLLGVVACAWSPILLPRMVYVGCVCVALLGSGA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC TVWLRPCWSALLLAGAAALLGFGAMGWQVTGALQAQLLPQDETRDATVRGQIVGLPIAEQ EEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHEEECCCCCCCCCEEEEEEEECCCHHH RRTRFQLRVDEAPAQPAALRGKLLQVAWYDDFDAERIGPRAALHAGARWQLRLKLRAPRG CCCEEEEEECCCCCCCHHHCCCEEEEEECCCCCHHHCCCHHHHCCCCEEEEEEEEECCCC LRNPGGFDAERQALAQRIAATGYVRIPATAHQTVPPQGVDAWRERMSQRIAERVGGPSAP CCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC YLRALALGDTRGLDDTAWATLRATGLSHLIAISGFHVGLVGAFFALLIAGIWRWQPRLGT HHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH FMPRLHAASIAALLGAAAYALLAGLALPTVRTVLMIAVVALARVLRRRASTAHVLSLALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVLWDPLSVLVAGFWLSFAGVAWLVWCLPSDDRAIVRGFLSAQTVATVGLLPLTVSLFG HHHHHCHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC QASLVGPFANLVAIPWWTFVVVPLCLLGTALEAIYPGTGMWAWQLAGWCFELTWPGFVWL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEECCCCEEEE GQTALALWWVPESDGVALIAALLGAFWLLLPRATPGKSLAALLWLPLLWPDRELPAAGEA CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC EVQVLDVGQGLAVLVRTQRHALLFDTGPAVRDGFDAGERVVLPALRALGVRRLDAIVLSH EEEEEECCCCEEEEEECCCCEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC ADADHAGGYAAVRTGLPVARTAAPPGAPLDVTARCRAGQQWEWDGVRFRFLHPGAGFPYL CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCEEEEEECCCCCCCCC RNQSSCVLRVETAYASALLPGDIGDIVERRLLRGHAADLRAELVIVPHHGSADGSQAGFI CCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEE AATGARLALVSSGHGNRFGHPRAEVVQRWKSGGAEVLDTAQAGAIRVWLGAAGLQLRERR EECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCHHHHHHC RWQPRLWDAAERRRSAAILSVSEQAAALPEESNRVGAGQGRRLADGAVAVAGRDRPGDRA CCCCCHHHHHHHHHHHHEEEECHHHHCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCC GAYVEPAPQ CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934834; 8830266 [H]