Click here to switch to the map view.

The map label for this gene is fliD [H]

Identifier: 21242718

GI number: 21242718

Start: 2304219

End: 2305544

Strand: Reverse

Name: fliD [H]

Synonym: XAC1974

Alternate gene names: 21242718

Gene position: 2305544-2304219 (Counterclockwise)

Preceding gene: 21242719

Following gene: 21242717

Centisome position: 44.55

GC content: 63.88

Gene sequence:

>1326_bases
ATGGCATCGGTGATCAGCACTTCTGGCTCCGGATTGGACATCCCTACCGTGGTGTCCACGCTGGTGTCCCGGCAGAAAGA
CCCCGAGCAGGCACGCATCAACAAGGCCGGCACCGCCGCGACCACGCAGTTGTCGGCGATCAGCCAGATCAAGAGCAGCA
TGACCACGCTCAAGTCTGCGCTGGACAAGGTGATCAGCAGCGCCGACACGAACGCCTACAAGGCCACGGTGCCAACCGAT
GCCGGCTTCACCGCCACCACCACCAGCTCGGCGGTGCCGGGCAACTATTCGGTGGAAGTGGTCTCGTTGGCGACCTCGCA
GAAACTGGCCTCCGGTGCGTTCACTGCCGATGCCACGGTGGGCAGCGGCACGCTGACCATCGGCTATGGCGATCAGAGCG
TCACCGTAGACATCAGCGGCACCGACAAGCTCACCGACATCGCCGCGGCCATCAACAAAGCTGCCGGCGGCAAGGGCGTG
ACCGCCAGCGTGGTCACCGCCAACGATGGCCAGCACCTGGTCTTCAATGCGGTCGATTCCGGCACCAAGGGCGCACTGAC
CATCAGCGCCAGCGACCCTAGCCTGAGCAGCCTGAGCTACGGCCCCGGCGTCACCGGCGGGCTGAACCAGACCGTCGCCG
CCGCCGACGCGCTGGTACGCGTTGACGGTTTCGAGCGCACGTCCAGCTCCAACACCGTCAGCGACCTCGTGCCCGGCGTG
GTGCTCACCCTGACCAAGGCCGCTGAAGGCACCAAGTTCAATCTGGGCGTGGCAGCCGACACCAGCGGCCTCAAGGGCAA
CCTCACCGCGTTCGCCGCGGCCTACAACACCGCCAACACATTGCTGGCCAAGAGCAGCAGCTACGACGCCACTACCAAGA
CCGCTTCGGCGCTGACCGGCGATTCGCTGGTGCGCAATCTGCAGCAACAACTGCGCGGCCAGGTCAGCGGCAACGTCAAC
GAACTCAAGGCCCTGGGCCTGACCATCGACAAGGATGGCGTGATGAGTTTCGACGGCGCCAAGTTCGACACCGCCATCGC
GTCGGATGGTGGCGCCGCGGCCGAGGTGTTCGGCAAGGACAGCAAGTTCAGCGGCACCCTGAGCAAGGTGCTGGATAGCA
ACGTCAATGTCACCAACGGCACGCTGACCCTGCGTTCGGACAGCTTGAACAAGACCATCAAGGGCTATGAGTCGGAGCTG
GACGATCTCGATGCGCGCATGGAGAAACTCAGCGACCGCTACACCGCCCAATTCACCGCAATGGAAACCATGATCACCCA
GTTGCAGAGCAGCACCAGCTCGCTCAGCAGCCTGCTGACAAGCTGA

Upstream 100 bases:

>100_bases
TGACCCGTCGCTGCCGCTAAAGTCCTCGCGGATGCGGCCGATACCCGTCACGTAATCCCATGCGTCCGTCTGTTTCGGGC
GCCCAGACGAGGAATGCAAC

Downstream 100 bases:

>100_bases
TTTCCGTGATGACGATCCTCAAGTCCTGTCAGGGTATTGCCGATACAAGTAAGGCCTATCGTGATTTCGGCCTTGCCTTC
CGGCAGGAGCGTCGTCGCAG

Product: flagellar protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MASVISTSGSGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSALDKVISSADTNAYKATVPTD
AGFTATTTSSAVPGNYSVEVVSLATSQKLASGAFTADATVGSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGV
TASVVTANDGQHLVFNAVDSGTKGALTISASDPSLSSLSYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDLVPGV
VLTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTGDSLVRNLQQQLRGQVSGNVN
ELKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVFGKDSKFSGTLSKVLDSNVNVTNGTLTLRSDSLNKTIKGYESEL
DDLDARMEKLSDRYTAQFTAMETMITQLQSSTSSLSSLLTS

Sequences:

>Translated_441_residues
MASVISTSGSGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSALDKVISSADTNAYKATVPTD
AGFTATTTSSAVPGNYSVEVVSLATSQKLASGAFTADATVGSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGV
TASVVTANDGQHLVFNAVDSGTKGALTISASDPSLSSLSYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDLVPGV
VLTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTGDSLVRNLQQQLRGQVSGNVN
ELKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVFGKDSKFSGTLSKVLDSNVNVTNGTLTLRSDSLNKTIKGYESEL
DDLDARMEKLSDRYTAQFTAMETMITQLQSSTSSLSSLLTS
>Mature_440_residues
ASVISTSGSGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSALDKVISSADTNAYKATVPTDA
GFTATTTSSAVPGNYSVEVVSLATSQKLASGAFTADATVGSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGVT
ASVVTANDGQHLVFNAVDSGTKGALTISASDPSLSSLSYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDLVPGVV
LTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTGDSLVRNLQQQLRGQVSGNVNE
LKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVFGKDSKFSGTLSKVLDSNVNVTNGTLTLRSDSLNKTIKGYESELD
DLDARMEKLSDRYTAQFTAMETMITQLQSSTSSLSSLLTS

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=468, Percent_Identity=30.1282051282051, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 44771; Mature: 44640

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVISTSGSGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSA
CCCEEECCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LDKVISSADTNAYKATVPTDAGFTATTTSSAVPGNYSVEVVSLATSQKLASGAFTADATV
HHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCCCCEEEEEEEEHHHHHHCCCCEECCEE
GSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGVTASVVTANDGQHLVFNAVDS
CCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCC
GTKGALTISASDPSLSSLSYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDLVPGV
CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHHHCCC
VLTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTG
EEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEHHCCHHHHEECCCCCCCCHHHHHHHHH
DSLVRNLQQQLRGQVSGNVNELKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVFGKD
HHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCEECCCCCCCCEECCCCCCCHHHCCCC
SKFSGTLSKVLDSNVNVTNGTLTLRSDSLNKTIKGYESELDDLDARMEKLSDRYTAQFTA
CCCHHHHHHHHCCCCEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
METMITQLQSSTSSLSSLLTS
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASVISTSGSGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSA
CCEEECCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LDKVISSADTNAYKATVPTDAGFTATTTSSAVPGNYSVEVVSLATSQKLASGAFTADATV
HHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCCCCEEEEEEEEHHHHHHCCCCEECCEE
GSGTLTIGYGDQSVTVDISGTDKLTDIAAAINKAAGGKGVTASVVTANDGQHLVFNAVDS
CCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCC
GTKGALTISASDPSLSSLSYGPGVTGGLNQTVAAADALVRVDGFERTSSSNTVSDLVPGV
CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHHHCCC
VLTLTKAAEGTKFNLGVAADTSGLKGNLTAFAAAYNTANTLLAKSSSYDATTKTASALTG
EEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEHHCCHHHHEECCCCCCCCHHHHHHHHH
DSLVRNLQQQLRGQVSGNVNELKALGLTIDKDGVMSFDGAKFDTAIASDGGAAAEVFGKD
HHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCEECCCCCCCCEECCCCCCCHHHCCCC
SKFSGTLSKVLDSNVNVTNGTLTLRSDSLNKTIKGYESELDDLDARMEKLSDRYTAQFTA
CCCHHHHHHHHCCCCEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
METMITQLQSSTSSLSSLLTS
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10678962; 10984043 [H]