Click here to switch to the map view.

The map label for this gene is fliR [H]

Identifier: 21242685

GI number: 21242685

Start: 2274345

End: 2275118

Strand: Reverse

Name: fliR [H]

Synonym: XAC1941

Alternate gene names: 21242685

Gene position: 2275118-2274345 (Counterclockwise)

Preceding gene: 21242686

Following gene: 21242684

Centisome position: 43.96

GC content: 67.05

Gene sequence:

>774_bases
ATGGTGATCGATGGCCAGCGCGCGTTCGCGATGGTCGGAGCGATCATGTGGACCATGCTGCGCACCGGTGCGTTGCTGAC
TGCAATGCCGTTGATCGGGACGCGGGCGGTGCCCGGACGGGTGCGGGTGATGCTGGCCGGAACGCTGGCGATGGTGCTGG
CGCCGATCCTGCCGCCGGTGCCGGAGTGGGACGGCTTTACCGCCCAGGCGGTGCTGAGCATTGCGCGCGAGCTGGCGGTC
GGGGCCAGCATGGGCTTCATGCTGAAGCTGATGTTCGAAGCCGGCGCATTGGCCGGCGAACTGGTGTCGCAGTCCACCGG
CCTGTCGTTCGCGCAGATGTCCGACCCCATGCGCGGCGTGACGTCGGGGGTGATCGCGCAGTGGTTCTACATCGGCTTCG
GGCTGCTGTTCTTCGCGGCCAACGGGCATCTGGCGGTGATCGCATTGCTGGTGGACAGCTACAAGGCATTGCCGATCGGG
ACCGCGTTGCCCGATGCCGGCGCATTCGCCGAAGTGGCGCCCACCCTGTTCCTGCAGATCCTGCGCGGCGGGTTGACCCT
GGCCTTGCCGATGATGGTGGCGATGCTGGCGGTCAACCTGGCCTTCGGCGCGCTGGCCAAGGCGGCGCCGGCATTGAACC
CCATGCAACTGGGCCTGCCGCTGACGGTATTGCTGGGGCTGTTCCTGCTGTCGAGTTTCGCCAGCGAGTTCGCCCCGCCG
GTGCAACGCATGTTCGATACCGCCTTCGATGCCGCAAGAGAGCTGACGGCCTGA

Upstream 100 bases:

>100_bases
ATGCTGCTGGGGCATCTGGTGGAGTTCACCATTGCGCTGTTCCAGCGCATTCCGCATCTGATCGGCTAGCGGGCCAGAGC
GGATGGATTCTGCAACCCAG

Downstream 100 bases:

>100_bases
TCCACACTAGACAACGGTCGACCACTGCAAGCACGGCAGGCCGCCAAGTTGCCGGCGCCGACGCCACTACGACGGGCCTC
CCCATCCTGCACCCCCAAAC

Product: flagellar biosynthetic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSIARELAV
GASMGFMLKLMFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIG
TALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPP
VQRMFDTAFDAARELTA

Sequences:

>Translated_257_residues
MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSIARELAV
GASMGFMLKLMFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIG
TALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPP
VQRMFDTAFDAARELTA
>Mature_257_residues
MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSIARELAV
GASMGFMLKLMFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIG
TALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPP
VQRMFDTAFDAARELTA

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=250, Percent_Identity=33.2, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 26875; Mature: 26875

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PEWDGFTAQAVLSIARELAVGASMGFMLKLMFEAGALAGELVSQSTGLSFAQMSDPMRGV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHH
TSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQI
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFASEFAPP
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCH
VQRMFDTAFDAARELTA
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609 [H]