| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is acnB [H]
Identifier: 21242629
GI number: 21242629
Start: 2188824
End: 2191415
Strand: Direct
Name: acnB [H]
Synonym: XAC1885
Alternate gene names: 21242629
Gene position: 2188824-2191415 (Clockwise)
Preceding gene: 21242628
Following gene: 21242630
Centisome position: 42.29
GC content: 66.63
Gene sequence:
>2592_bases ATGTTGGAAGCCTATCGCCACCACGTTGCAGAGCGCGCCGCGCTCGGTATCCCGCCGTTGCCGCTGACCGCGCAGCAGAC CGCCGAGGTCATCGAGCTGCTCAAGGCGCCGCCTGCCGGTGAAGAGGAGTTCCTGGTCGAACTGCTCAGCCAGCGCGTGC CCGCCGGCGTCGACGACGCTGCCAAGGTCAAGGCCTCGTACCTGGCCGCGGTGGCCTTCGGCACCGAGACCACCGCGCTG ATCAGCCCCACGCGCGCCACCGAACTGCTCGGCACCATGCTGGGTGGCTACAACATCCAGCCGCTGGTCGACCTGCTGGA CAACGCCGAGCTGGGCGCCACCGCCGCCGAAGCGCTCAAGCACACCTTGCTGGTGTTCGATGCGTTTCACGACGTGCAGG AAAAGGCGCAAGCCGGTAATACGCATGCCAAGGCCGTGCTGCAGAGCTGGGCCGATGCCGAGTGGTTCACCAGCAGGCCG GAAGTGCCGCAGAGCCTGACCGTCACCGTGTTCAAGGTGCCGGGCGAGACCAATACCGACGACCTGTCGCCGGCGCCGGA CGCCACCACCCGCCCGGACATCCCGTTGCACGCGCTGGCGATGCTGAAGAACAAGCGCGACGGCGCCGCGTTCGAGCCGG AGGAAGACGGCAAGCGCGGCCCGATCCAGGCGATCGCCGAGCTCAAGGACAAGGGCCATCTGGTCGCCTACGTGGGCGAT GTGGTCGGGACCGGTTCCTCGCGCAAGTCGGCGACCAACTCGGTGCTGTGGTGGACCGGCGAAGACATTCCGTACATCCC CAACAAGCGCTTCGGCGGCGTGTGCCTGGGCAGCAAGATCGCCCCGATCTTCTACAACACCATGGAAGATGCCGGCGCCT TGCCGATCGAGCTGGACGTGTCGCAGATGGAGCATGGCGATGTGGTCGAGCTGCGTCCGTACGACGGCAAGGCGCTGAAG AACGGGCAGGTGATCGCCGAGTTCGCGATGAAGTCGGACGTGCTGTTCGACGAAGTGCGCGCCGGCGGCCGCATCCCGTT GATCGTCGGCCGCGGCCTCACCGCCAAGGCGCGCGAGTTCCTCGGCCTGCCGGCCTCGGACCTGTTCCGGCTGCCGATGG ACCCGCCGGACACCGGCAAGGGTTTCTCGCTGGCGCAGAAGATGGTCGGCCGCGCCTGCGGCCTGCCCGAAGGCCAGGGC ATGCGCCCGGGCACCTATTGCGAACCGAAGATGACCTCGGTGGGCTCGCAGGACACCACCGGGCCGATGACCCGCGACGA GCTGAAGGACCTGGCCTGCCTGGGCTTCTCCGCCGACCTGGTGATGCAGTCGTTCTGCCACACCGCCGCGTACCCGAAGC CGGTGGACGTCAAGACCCACCACACGCTGCCGGAGTTCATCTCCACCCGCGGCGGCGTGTCGCTGCGTCCGGGCGATGGT GTGATCCACAGCTGGCTCAACCGCATGCTGCTGCCCGACACCGTCGGCACCGGCGGCGACTCGCATACCCGCTTCCCGAT CGGCATCTCGTTCCCGGCCGGCTCCGGCCTGGTGGCGTTCGCAGCGGCCACCGGCGTGATGCCGCTGGACATGCCCGAGA GCGTGCTGGTGCGGTTCAAGGGGCAGATGCAGCCGGGCGTGACCCTGCGCGACCTGGTCAACGCGATCCCGCTGTACGCG ATCAAGCAGGGCTTGCTGACCGTGGCCAAGCAGGGCAAGAAGAACATCTTCTCCGGCCGCATCCTGGAAATCGAAGGCTT GCCGAACCTGAAGGTGGAGCAGGCGTTCGAGCTGTCCGATGCCTCGGCCGAGCGTTCGGCGGCCGGTTGCACCGTGCACC TGGACAAGGCGCCGATCATCGAATACCTGACCAGCAACATCACCCTGCTGCGCTGGATGATTGCCGAAGGCTATGCCGAT GCGCGCACCCTGGGCCGCCGCATCAAGAAGATGGAAGAGTGGCTGGCCGATCCGCAGCTGCTGCAGCCCGATGCCGACGC CGAGTACGCTGCGGTCATCGAGATCGACCTGGCCGATATCCATGAGCCGATCGTGGCGTGCCCGAACGACCCGGACGACG TCAAGACGCTGTCGGACGTGGCCGGTGCGGCCATCGACGAAGTGTTCATTGGTTCGTGCATGACCAACATCGGCCACTTC CGCGCAGCGGCCAAGCTGCTGGAAGGCAAGCGCGACATCCCGACCCGGTTGTGGGTGGCACCGCCGACCAAGATGGATGC CTCCGAGCTGACCAAGGAAGGCCACTACGGCACCTTCGGCGCGGCCGGGGCGCGTATGGAAATGCCGGGCTGCTCGCTGT GCATGGGCAACCAGGCGCAGGCGCGCGAGGGCGCCACGGTGTTCTCCACCTCCACGCGTAACTTCCCGAACCGTCTGGGC CGCAACACCAATGTGTACCTGGGCTCGGCGGAACTGGCGGCAATTTGTTCGCGCCTGGGCCGCATTCCGACCAAGGACGA GTACATGGCCGATGTGGGCGTGATCAAGACCAGTGGCGAGCAGATCTATCGCTACATGAACTTCGATCAGATCCAGGAGT ATCAGAACGTGGCGGAGACCGTCGCCGCCTGA
Upstream 100 bases:
>100_bases CGATTACTTCAAGGGTTTGAAGATCGTCGTTCCCAAACCCGCCCCCTGATCCACGTTTTGCGCTTTACCACCTTCACCGC TGCTTTTTTGGAGAACCCGC
Downstream 100 bases:
>100_bases TTCATCCAGCAGGTTGGTCGTTCCGAAATGCCCGGCACTGCCGGGCATTTCGTTCTCTAGGCAATGGCTTCGTGTTGTGC TCACGATGCCCGGCGTTAAC
Product: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Products: NA
Alternate protein names: Aconitase 2; 2-methylisocitrate dehydratase; Citrate hydro-lyase 2 [H]
Number of amino acids: Translated: 863; Mature: 863
Protein sequence:
>863_residues MLEAYRHHVAERAALGIPPLPLTAQQTAEVIELLKAPPAGEEEFLVELLSQRVPAGVDDAAKVKASYLAAVAFGTETTAL ISPTRATELLGTMLGGYNIQPLVDLLDNAELGATAAEALKHTLLVFDAFHDVQEKAQAGNTHAKAVLQSWADAEWFTSRP EVPQSLTVTVFKVPGETNTDDLSPAPDATTRPDIPLHALAMLKNKRDGAAFEPEEDGKRGPIQAIAELKDKGHLVAYVGD VVGTGSSRKSATNSVLWWTGEDIPYIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSQMEHGDVVELRPYDGKALK NGQVIAEFAMKSDVLFDEVRAGGRIPLIVGRGLTAKAREFLGLPASDLFRLPMDPPDTGKGFSLAQKMVGRACGLPEGQG MRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPEFISTRGGVSLRPGDG VIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGQMQPGVTLRDLVNAIPLYA IKQGLLTVAKQGKKNIFSGRILEIEGLPNLKVEQAFELSDASAERSAAGCTVHLDKAPIIEYLTSNITLLRWMIAEGYAD ARTLGRRIKKMEEWLADPQLLQPDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLSDVAGAAIDEVFIGSCMTNIGHF RAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYGTFGAAGARMEMPGCSLCMGNQAQAREGATVFSTSTRNFPNRLG RNTNVYLGSAELAAICSRLGRIPTKDEYMADVGVIKTSGEQIYRYMNFDQIQEYQNVAETVAA
Sequences:
>Translated_863_residues MLEAYRHHVAERAALGIPPLPLTAQQTAEVIELLKAPPAGEEEFLVELLSQRVPAGVDDAAKVKASYLAAVAFGTETTAL ISPTRATELLGTMLGGYNIQPLVDLLDNAELGATAAEALKHTLLVFDAFHDVQEKAQAGNTHAKAVLQSWADAEWFTSRP EVPQSLTVTVFKVPGETNTDDLSPAPDATTRPDIPLHALAMLKNKRDGAAFEPEEDGKRGPIQAIAELKDKGHLVAYVGD VVGTGSSRKSATNSVLWWTGEDIPYIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSQMEHGDVVELRPYDGKALK NGQVIAEFAMKSDVLFDEVRAGGRIPLIVGRGLTAKAREFLGLPASDLFRLPMDPPDTGKGFSLAQKMVGRACGLPEGQG MRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPEFISTRGGVSLRPGDG VIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGQMQPGVTLRDLVNAIPLYA IKQGLLTVAKQGKKNIFSGRILEIEGLPNLKVEQAFELSDASAERSAAGCTVHLDKAPIIEYLTSNITLLRWMIAEGYAD ARTLGRRIKKMEEWLADPQLLQPDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLSDVAGAAIDEVFIGSCMTNIGHF RAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYGTFGAAGARMEMPGCSLCMGNQAQAREGATVFSTSTRNFPNRLG RNTNVYLGSAELAAICSRLGRIPTKDEYMADVGVIKTSGEQIYRYMNFDQIQEYQNVAETVAA >Mature_863_residues MLEAYRHHVAERAALGIPPLPLTAQQTAEVIELLKAPPAGEEEFLVELLSQRVPAGVDDAAKVKASYLAAVAFGTETTAL ISPTRATELLGTMLGGYNIQPLVDLLDNAELGATAAEALKHTLLVFDAFHDVQEKAQAGNTHAKAVLQSWADAEWFTSRP EVPQSLTVTVFKVPGETNTDDLSPAPDATTRPDIPLHALAMLKNKRDGAAFEPEEDGKRGPIQAIAELKDKGHLVAYVGD VVGTGSSRKSATNSVLWWTGEDIPYIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSQMEHGDVVELRPYDGKALK NGQVIAEFAMKSDVLFDEVRAGGRIPLIVGRGLTAKAREFLGLPASDLFRLPMDPPDTGKGFSLAQKMVGRACGLPEGQG MRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPEFISTRGGVSLRPGDG VIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGQMQPGVTLRDLVNAIPLYA IKQGLLTVAKQGKKNIFSGRILEIEGLPNLKVEQAFELSDASAERSAAGCTVHLDKAPIIEYLTSNITLLRWMIAEGYAD ARTLGRRIKKMEEWLADPQLLQPDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLSDVAGAAIDEVFIGSCMTNIGHF RAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYGTFGAAGARMEMPGCSLCMGNQAQAREGATVFSTSTRNFPNRLG RNTNVYLGSAELAAICSRLGRIPTKDEYMADVGVIKTSGEQIYRYMNFDQIQEYQNVAETVAA
Specific function: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate as well as the dehydration of 2-methylisocitrate to cis-2-methylaconitate [H]
COG id: COG1049
COG function: function code C; Aconitase B
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aconitase/IPM isomerase family [H]
Homologues:
Organism=Escherichia coli, GI2367097, Length=864, Percent_Identity=72.5694444444444, Blast_Score=1261, Evalue=0.0, Organism=Escherichia coli, GI1786259, Length=375, Percent_Identity=24.5333333333333, Blast_Score=78, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015931 - InterPro: IPR015937 - InterPro: IPR001030 - InterPro: IPR015928 - InterPro: IPR015932 - InterPro: IPR018136 - InterPro: IPR004406 - InterPro: IPR015930 - InterPro: IPR015933 - InterPro: IPR015929 [H]
Pfam domain/function: PF00330 Aconitase; PF06434 Aconitase_2_N; PF11791 Aconitase_B_N [H]
EC number: =4.2.1.3; =4.2.1.99 [H]
Molecular weight: Translated: 92906; Mature: 92906
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00450 ACONITASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEAYRHHVAERAALGIPPLPLTAQQTAEVIELLKAPPAGEEEFLVELLSQRVPAGVDDA CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHH AKVKASYLAAVAFGTETTALISPTRATELLGTMLGGYNIQPLVDLLDNAELGATAAEALK HHHHHHHHHHHEECCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHH HTLLVFDAFHDVQEKAQAGNTHAKAVLQSWADAEWFTSRPEVPQSLTVTVFKVPGETNTD HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCCCCCEEEEEEECCCCCCCC DLSPAPDATTRPDIPLHALAMLKNKRDGAAFEPEEDGKRGPIQAIAELKDKGHLVAYVGD CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECH VVGTGSSRKSATNSVLWWTGEDIPYIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDV HHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEEH SQMEHGDVVELRPYDGKALKNGQVIAEFAMKSDVLFDEVRAGGRIPLIVGRGLTAKAREF HHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH LGLPASDLFRLPMDPPDTGKGFSLAQKMVGRACGLPEGQGMRPGTYCEPKMTSVGSQDTT HCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCC GPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPEFISTRGGVSLRPGDG CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCH VIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFK HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHHCCCCCCCCCHHHHHHHC GQMQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNIFSGRILEIEGLPNLKVEQAFELSD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHCCCC ASAERSAAGCTVHLDKAPIIEYLTSNITLLRWMIAEGYADARTLGRRIKKMEEWLADPQL CCHHHCCCCCEEEECCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC LQPDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLSDVAGAAIDEVFIGSCMTNIGHF CCCCCCCCEEEEEEEEHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYGTFGAAGARMEMPGCSLCMGNQAQ HHHHHHHCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCCEECCCCCCEECCCCHH AREGATVFSTSTRNFPNRLGRNTNVYLGSAELAAICSRLGRIPTKDEYMADVGVIKTSGE HCCCCEEEECCCCCCHHHHCCCCEEEECCHHHHHHHHHHCCCCCCHHHHHHHHEEECCHH QIYRYMNFDQIQEYQNVAETVAA HHHHHCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MLEAYRHHVAERAALGIPPLPLTAQQTAEVIELLKAPPAGEEEFLVELLSQRVPAGVDDA CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHH AKVKASYLAAVAFGTETTALISPTRATELLGTMLGGYNIQPLVDLLDNAELGATAAEALK HHHHHHHHHHHEECCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHH HTLLVFDAFHDVQEKAQAGNTHAKAVLQSWADAEWFTSRPEVPQSLTVTVFKVPGETNTD HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCCCCCEEEEEEECCCCCCCC DLSPAPDATTRPDIPLHALAMLKNKRDGAAFEPEEDGKRGPIQAIAELKDKGHLVAYVGD CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECH VVGTGSSRKSATNSVLWWTGEDIPYIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDV HHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEEH SQMEHGDVVELRPYDGKALKNGQVIAEFAMKSDVLFDEVRAGGRIPLIVGRGLTAKAREF HHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH LGLPASDLFRLPMDPPDTGKGFSLAQKMVGRACGLPEGQGMRPGTYCEPKMTSVGSQDTT HCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCC GPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPEFISTRGGVSLRPGDG CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCH VIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFK HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEHHHHCCCCCCCCCHHHHHHHC GQMQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNIFSGRILEIEGLPNLKVEQAFELSD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHCCCC ASAERSAAGCTVHLDKAPIIEYLTSNITLLRWMIAEGYADARTLGRRIKKMEEWLADPQL CCHHHCCCCCEEEECCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC LQPDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLSDVAGAAIDEVFIGSCMTNIGHF CCCCCCCCEEEEEEEEHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAAAKLLEGKRDIPTRLWVAPPTKMDASELTKEGHYGTFGAAGARMEMPGCSLCMGNQAQ HHHHHHHCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCCEECCCCCCEECCCCHH AREGATVFSTSTRNFPNRLGRNTNVYLGSAELAAICSRLGRIPTKDEYMADVGVIKTSGE HCCCCEEEECCCCCCHHHHCCCCEEEECCHHHHHHHHHHCCCCCCHHHHHHHHEEECCHH QIYRYMNFDQIQEYQNVAETVAA HHHHHCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]