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The map label for this gene is cph2 [H]

Identifier: 21242540

GI number: 21242540

Start: 2066756

End: 2068612

Strand: Reverse

Name: cph2 [H]

Synonym: XAC1795

Alternate gene names: 21242540

Gene position: 2068612-2066756 (Counterclockwise)

Preceding gene: 21242542

Following gene: 21242537

Centisome position: 39.97

GC content: 66.56

Gene sequence:

>1857_bases
ATGCCTTCCCTGCCCGCCTCTGCCGAGTCTCTTCTTCCGCCCACGCTCGACGAGTCCACCCGGCTCGAGGTGCTGCGCGG
CCTGTGCCTGCTGGATTCGCCGCCAGACCCGGTGTTCGACACCGTGGCCGCGATGGCCGCGCGCAGCCTGGACGCGGAAA
TTGCGGTGGTCTCGCTGGTGGACGAGCACCGCCAGTGGTTCAAGGCGCGCATCGGCCTGGAAGCGCGCGAAACGCCGCGT
AGCCAGGCGTTCTGCGCGCATGCGATCCGCTCGGACGAGGTGATGGTGGTGCCGGATGCGCAACTGGATCCGCGCTTCTG
CGACAACCCGCTGGTGCTGGGCCCGCCGTTCATTCGCTTCTATGCCGGCGCACCGCTGAAGCTGCGCGACGGCCATCGCA
TCGGCACCTTGTGCGTGATCGGCACCAGTCCGCGCCCAGGGCTGGATCAAGCTGCGATCACGCAGCTGGAAGGCCTGCGC
GACTTGGCCGTGCTGCGCGTGGAAAACCTGCGCAGTACCACCTACCGCGATGGTCCGACCGGGCTGCCCAATCGCTCGCG
CTTTAGCGAAGACCTGGATACCTGGCTGTCGCAACGCGACACTGCGCCGGCGACCACGGCGGTGGCCATCGATGTCTGCG
GCAGCGACTACTTCCGCGATATGGTCAAGGCGCTGGGCTGGGAATACGCAGACGGCTACATCGCCCTGGCGCAGCGTCGC
CTTGCGGCCTATCTGCCCGGCGGCACCCTGCTGTATCGGCTGGACCCGACGACCTTCGGCTTCCTGGCCCAGGCGGAAGG
CCAGCGTCTGGCCACGCTATGCACCAAGGTCTCCAAGGCGTTCACCGAGCCATTGGAACACCAGGGCATTCCGCATACCG
CGGTGGCTTCGATCGGCGCGGTGTCGCTGCAGTCCAGCTACGGCGCCGCCGATACCATCCGCTCACTGACCACCGCGGTG
GATATCGCGCGCGAGCGCTGCCTGCCGTGGAGCATGTACGAGCGCAAGCACGATGTCGCCCAGCGCAACACCTTCCGCCT
GCTCGCCGCCCTGCCCGCTGCCCTGGACAGCTCCAGCCAACTGCGCCTGCACTTTCAACCGCGCGTGGATCTGCACGACC
ACCGCTGCGTAGGCGTGGAAGCCTTGCTGCGCTGGCAGCACCCGATGATCGGCCCAGTGATGCCGTCGGATTTCATTCCG
ATGGCCGAGAAAACTGCGCTGATCAACCGCATTACCGCCTGGGTCATCGACAACGGCATTGCGCAGGCAGCGCGCTGGCA
GCAGCAAGGCCTGGACTTCAACCTGGCCTTGAACGTGTCGGCTGCCGATCTGGATCGCCCCGGTTTTGCCGGCCTGTTGC
GGCGCGGCCTGGATCGTCACAAGCTGGACCCGCGCCGGCTGGAGATCGAATTCACCGAAAGCGCGATGATCCGCCACCCC
GATCACCTGGCCGAACAACTGGCCGCCATTGCGGCGCTGGGCGTGCATATCGCCATCGACGACTTCGGCACCGGCTACAG
CAATTTCAGCTATCTCAAGCAGCTGCCGGCCAGTTCGTTGAAGATCGATCAATCCTTCATCCGCTCGCTGCCGGACAGCC
GAACCGATCGCACCCTGGTACCGGCGATGATCCAGCTTGGCCACAGTCTGGGCCAGCGCGTGGTCGCCGAAGGCATCGAA
TCGGCGGAGGCGTACGCGCAATTGCGCGCCTGGGGCTGCGACGAAGGCCAGGGCTACTGGATCGCCAAACCGATGCCGGC
CGCCGCGCTGGAAACCTGGCTGGAAACGCCGTGGCACGAGCAACATGCCGCGCCGGTCAACCTGCTTGCCGCCAGCTTGG
CCGCGGCGCGCGTCTAG

Upstream 100 bases:

>100_bases
CACCGTTCATGAATTCCAAGGCGTGCTGCGTCCCGTACTGCAACTGAACGGAGCCAGCCACCGCCGGTCAAGGGATTACG
CTTCAGGCCGATACGAGCAC

Downstream 100 bases:

>100_bases
GCGCAGCCAACAAACCAACCGCGTCCACCACTCGGTGGCGCGTGCGGTACTCGAGCGGCATCTCCCACGCGTGCGCAGTG
GCTCCTGTGGGCCATCCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 618; Mature: 617

Protein sequence:

>618_residues
MPSLPASAESLLPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIAVVSLVDEHRQWFKARIGLEARETPR
SQAFCAHAIRSDEVMVVPDAQLDPRFCDNPLVLGPPFIRFYAGAPLKLRDGHRIGTLCVIGTSPRPGLDQAAITQLEGLR
DLAVLRVENLRSTTYRDGPTGLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYIALAQRR
LAAYLPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADTIRSLTTAV
DIARERCLPWSMYERKHDVAQRNTFRLLAALPAALDSSSQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIP
MAEKTALINRITAWVIDNGIAQAARWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHP
DHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMIQLGHSLGQRVVAEGIE
SAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLETPWHEQHAAPVNLLAASLAAARV

Sequences:

>Translated_618_residues
MPSLPASAESLLPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIAVVSLVDEHRQWFKARIGLEARETPR
SQAFCAHAIRSDEVMVVPDAQLDPRFCDNPLVLGPPFIRFYAGAPLKLRDGHRIGTLCVIGTSPRPGLDQAAITQLEGLR
DLAVLRVENLRSTTYRDGPTGLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYIALAQRR
LAAYLPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADTIRSLTTAV
DIARERCLPWSMYERKHDVAQRNTFRLLAALPAALDSSSQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIP
MAEKTALINRITAWVIDNGIAQAARWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHP
DHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMIQLGHSLGQRVVAEGIE
SAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLETPWHEQHAAPVNLLAASLAAARV
>Mature_617_residues
PSLPASAESLLPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIAVVSLVDEHRQWFKARIGLEARETPRS
QAFCAHAIRSDEVMVVPDAQLDPRFCDNPLVLGPPFIRFYAGAPLKLRDGHRIGTLCVIGTSPRPGLDQAAITQLEGLRD
LAVLRVENLRSTTYRDGPTGLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYIALAQRRL
AAYLPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADTIRSLTTAVD
IARERCLPWSMYERKHDVAQRNTFRLLAALPAALDSSSQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIPM
AEKTALINRITAWVIDNGIAQAARWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPD
HLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMIQLGHSLGQRVVAEGIES
AEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLETPWHEQHAAPVNLLAASLAAARV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=487, Percent_Identity=28.5420944558522, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI1787541, Length=437, Percent_Identity=29.5194508009153, Blast_Score=177, Evalue=3e-45,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=35.5932203389831, Blast_Score=164, Evalue=2e-41,
Organism=Escherichia coli, GI226510982, Length=427, Percent_Identity=26.6978922716628, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=32.1888412017167, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=32.520325203252, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=33.203125, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787055, Length=233, Percent_Identity=31.7596566523605, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081845, Length=224, Percent_Identity=33.4821428571429, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788849, Length=207, Percent_Identity=31.8840579710145, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1786507, Length=216, Percent_Identity=31.4814814814815, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI87082096, Length=200, Percent_Identity=29, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787410, Length=140, Percent_Identity=29.2857142857143, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789650, Length=195, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 67913; Mature: 67782

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLPASAESLLPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIAVVSLV
CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
DEHRQWFKARIGLEARETPRSQAFCAHAIRSDEVMVVPDAQLDPRFCDNPLVLGPPFIRF
HHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCHHHH
YAGAPLKLRDGHRIGTLCVIGTSPRPGLDQAAITQLEGLRDLAVLRVENLRSTTYRDGPT
HCCCCEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYIALAQRR
CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHH
LAAYLPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGA
HHHCCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VSLQSSYGAADTIRSLTTAVDIARERCLPWSMYERKHDVAQRNTFRLLAALPAALDSSSQ
HHECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVIDNGI
EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AQAARWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHP
HHHHHHHHHCCCEEEEEEEEHHCCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCHHHCCH
DHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLV
HHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHH
PAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLETPWHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCH
QHAAPVNLLAASLAAARV
HCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PSLPASAESLLPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIAVVSLV
CCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
DEHRQWFKARIGLEARETPRSQAFCAHAIRSDEVMVVPDAQLDPRFCDNPLVLGPPFIRF
HHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCHHHH
YAGAPLKLRDGHRIGTLCVIGTSPRPGLDQAAITQLEGLRDLAVLRVENLRSTTYRDGPT
HCCCCEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYIALAQRR
CCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHH
LAAYLPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGA
HHHCCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VSLQSSYGAADTIRSLTTAVDIARERCLPWSMYERKHDVAQRNTFRLLAALPAALDSSSQ
HHECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVIDNGI
EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AQAARWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHP
HHHHHHHHHCCCEEEEEEEEHHCCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCHHHCCH
DHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLV
HHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHH
PAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLETPWHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCH
QHAAPVNLLAASLAAARV
HCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]