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The map label for this gene is kaiC [H]

Identifier: 21242420

GI number: 21242420

Start: 1928584

End: 1930101

Strand: Direct

Name: kaiC [H]

Synonym: XAC1671

Alternate gene names: 21242420

Gene position: 1928584-1930101 (Clockwise)

Preceding gene: 77748602

Following gene: 21242421

Centisome position: 37.26

GC content: 61.4

Gene sequence:

>1518_bases
ATGAAGAACGTGACGCAGATGATCGCAAACCGCATCACTACTGGCAGTACCGGGCTCGACACTATCGTGCGAGGTGGGCT
GCCCGCCAACCGCTTGTACCTGCTCGAAGGCCAGCCCGGTGCCGGCAAAACGACTTTGGCGCTTCAGTTTCTGTTGGATG
GTGCGGCCAAGGGCGACAGCTGCCTGTATGTGACCTTGTCTGAAACCATCGACGAGCTCACCGAAGTGGCCGCTTCGCAT
CATTGGTCGTTGGAGTCCCTGCATATTTTTGAGCTGGCATCCGCCGAGGCGTTCTTGGGCGAACGGCGGCAGCAATCCAT
CCTGCATCCATGGGAGATGGAGCTGGATGGCACCATCAAGCTCATCCAGGCCGAAGTGGATCGGGTCAAACCGACGCGGG
TGGTGTTCGATTCGTTGTCCGAGTTGCGCCTGCTTGCGCAGGATTCGCTGCGCTATCGGCGCCAGGTGCTGGCGCTCAAG
CAGTATTTCGCGCCGCGCAACATCACGGTGTTCCTGGTGGACGATCTGACCGGCGAGCACGGCGAGCGCGATGCGCATCT
GCACAGCCTGTGCCATGGGGTGATTTCGCTGGAGCGCATGACGCTGGAGTTCGGTGCGGCGCGGCGCCGGATGCAGGTGC
AGAAATTGCGTGGCGTAGATTTCATCGCCGGCTATCACGATCTGGCCATCGTCACCGGCGGTATGCGCATCTATCCGCGT
TTGATCGCCTCCGACCACCACCTGCCATTTGTCGGCGAACCGGTAGGCAGCGGAGTGGAGCGCATCGATGCATTGCTGCA
TGGCGGCCCGTTGCGCGGTACCAGCACGCTAGTGACAGGGCCAGCCGGCTCGGGCAAGACCAATCTGGCATTGCAGTTCG
TGGTTGCCGCGTGCGAGCGCGGCGAGCATTGCTGCGTGCTGGAGTTCGACGAGCGCACCGGCACCTTGTTGAAGCGTGCC
GAAGGCCTGGACATGGATCTGCGCAAATATATGGACGCGGGTCTGCTGGAGTTGCACCAGATGGATCCGGCCGAAGTCAC
GCCGGGCGAGTTTGCCTGGACGGTACGCGGCAGCGTGGAGGAGCGCGCGTGCCGCATCCTGGTGATCGACAGCCTCAACG
GGTATCTGGCGTCGATGCCGCAGGAAAAGCAGCTGATGTTGCAGATGCACGAGCTGTTGTCGTATCTCAACCAGAGCGGG
GTGACCACGTTCCTGATCAACCCGCAGCAGGGGCTGGTCGGCAGCATGGCGACCAGTAGCACCCTCAATGTCTCCTACAT
GGCCGACACCGTCGTCTTGCTGCGCTTTTTCGAGGCGAAAGGACGCATTCGCAAGGCCTTGTCGGTGATCAAGAATCGCA
GCGGCGCGCATGAAGATGCGATTCGCGAACTGCGCATCGGCAGCAGCGGCCTTCAACTGAGTGAGCCGCTGGAGAAATTC
CACGGCGTGTTGACCGGTACGCCGCAGTTTGTCGGAGACGACGGCCCGTTGCTGGATCGTCCCGTTGACTATCTGTGA

Upstream 100 bases:

>100_bases
TACCCGCAACAGCCATGACGTGCCTTGCGTCAAGTAAAGCAAACTGATCAGTTCAGTCGCTCCCACCGGGTCATACTGTC
CGCGTGTTAAATTCAGTTCC

Downstream 100 bases:

>100_bases
CGCGGACGGCTCCATCGTTCATATCATCGCGCCGTTCGGACGCGATGCGCAGAGCATTGCCGGCATCGTTGGCGAACGCG
GGCTAGCGCGCCGGGTCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MKNVTQMIANRITTGSTGLDTIVRGGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGDSCLYVTLSETIDELTEVAASH
HWSLESLHIFELASAEAFLGERRQQSILHPWEMELDGTIKLIQAEVDRVKPTRVVFDSLSELRLLAQDSLRYRRQVLALK
QYFAPRNITVFLVDDLTGEHGERDAHLHSLCHGVISLERMTLEFGAARRRMQVQKLRGVDFIAGYHDLAIVTGGMRIYPR
LIASDHHLPFVGEPVGSGVERIDALLHGGPLRGTSTLVTGPAGSGKTNLALQFVVAACERGEHCCVLEFDERTGTLLKRA
EGLDMDLRKYMDAGLLELHQMDPAEVTPGEFAWTVRGSVEERACRILVIDSLNGYLASMPQEKQLMLQMHELLSYLNQSG
VTTFLINPQQGLVGSMATSSTLNVSYMADTVVLLRFFEAKGRIRKALSVIKNRSGAHEDAIRELRIGSSGLQLSEPLEKF
HGVLTGTPQFVGDDGPLLDRPVDYL

Sequences:

>Translated_505_residues
MKNVTQMIANRITTGSTGLDTIVRGGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGDSCLYVTLSETIDELTEVAASH
HWSLESLHIFELASAEAFLGERRQQSILHPWEMELDGTIKLIQAEVDRVKPTRVVFDSLSELRLLAQDSLRYRRQVLALK
QYFAPRNITVFLVDDLTGEHGERDAHLHSLCHGVISLERMTLEFGAARRRMQVQKLRGVDFIAGYHDLAIVTGGMRIYPR
LIASDHHLPFVGEPVGSGVERIDALLHGGPLRGTSTLVTGPAGSGKTNLALQFVVAACERGEHCCVLEFDERTGTLLKRA
EGLDMDLRKYMDAGLLELHQMDPAEVTPGEFAWTVRGSVEERACRILVIDSLNGYLASMPQEKQLMLQMHELLSYLNQSG
VTTFLINPQQGLVGSMATSSTLNVSYMADTVVLLRFFEAKGRIRKALSVIKNRSGAHEDAIRELRIGSSGLQLSEPLEKF
HGVLTGTPQFVGDDGPLLDRPVDYL
>Mature_505_residues
MKNVTQMIANRITTGSTGLDTIVRGGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGDSCLYVTLSETIDELTEVAASH
HWSLESLHIFELASAEAFLGERRQQSILHPWEMELDGTIKLIQAEVDRVKPTRVVFDSLSELRLLAQDSLRYRRQVLALK
QYFAPRNITVFLVDDLTGEHGERDAHLHSLCHGVISLERMTLEFGAARRRMQVQKLRGVDFIAGYHDLAIVTGGMRIYPR
LIASDHHLPFVGEPVGSGVERIDALLHGGPLRGTSTLVTGPAGSGKTNLALQFVVAACERGEHCCVLEFDERTGTLLKRA
EGLDMDLRKYMDAGLLELHQMDPAEVTPGEFAWTVRGSVEERACRILVIDSLNGYLASMPQEKQLMLQMHELLSYLNQSG
VTTFLINPQQGLVGSMATSSTLNVSYMADTVVLLRFFEAKGRIRKALSVIKNRSGAHEDAIRELRIGSSGLQLSEPLEKF
HGVLTGTPQFVGDDGPLLDRPVDYL

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 55679; Mature: 55679

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVTQMIANRITTGSTGLDTIVRGGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGDS
CCHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC
CLYVTLSETIDELTEVAASHHWSLESLHIFELASAEAFLGERRQQSILHPWEMELDGTIK
EEEEEHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
LIQAEVDRVKPTRVVFDSLSELRLLAQDSLRYRRQVLALKQYFAPRNITVFLVDDLTGEH
EEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
GERDAHLHSLCHGVISLERMTLEFGAARRRMQVQKLRGVDFIAGYHDLAIVTGGMRIYPR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECCHHHHHH
LIASDHHLPFVGEPVGSGVERIDALLHGGPLRGTSTLVTGPAGSGKTNLALQFVVAACER
HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHC
GEHCCVLEFDERTGTLLKRAEGLDMDLRKYMDAGLLELHQMDPAEVTPGEFAWTVRGSVE
CCCEEEEEECCCCCHHHHHHCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCEEEEECCCHH
ERACRILVIDSLNGYLASMPQEKQLMLQMHELLSYLNQSGVTTFLINPQQGLVGSMATSS
HCCEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCC
TLNVSYMADTVVLLRFFEAKGRIRKALSVIKNRSGAHEDAIRELRIGSSGLQLSEPLEKF
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
HGVLTGTPQFVGDDGPLLDRPVDYL
CCEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNVTQMIANRITTGSTGLDTIVRGGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGDS
CCHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC
CLYVTLSETIDELTEVAASHHWSLESLHIFELASAEAFLGERRQQSILHPWEMELDGTIK
EEEEEHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
LIQAEVDRVKPTRVVFDSLSELRLLAQDSLRYRRQVLALKQYFAPRNITVFLVDDLTGEH
EEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
GERDAHLHSLCHGVISLERMTLEFGAARRRMQVQKLRGVDFIAGYHDLAIVTGGMRIYPR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECCHHHHHH
LIASDHHLPFVGEPVGSGVERIDALLHGGPLRGTSTLVTGPAGSGKTNLALQFVVAACER
HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHC
GEHCCVLEFDERTGTLLKRAEGLDMDLRKYMDAGLLELHQMDPAEVTPGEFAWTVRGSVE
CCCEEEEEECCCCCHHHHHHCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCEEEEECCCHH
ERACRILVIDSLNGYLASMPQEKQLMLQMHELLSYLNQSGVTTFLINPQQGLVGSMATSS
HCCEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCC
TLNVSYMADTVVLLRFFEAKGRIRKALSVIKNRSGAHEDAIRELRIGSSGLQLSEPLEKF
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
HGVLTGTPQFVGDDGPLLDRPVDYL
CCEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12477935 [H]