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The map label for this gene is yiaD [H]

Identifier: 21242231

GI number: 21242231

Start: 1707803

End: 1708528

Strand: Direct

Name: yiaD [H]

Synonym: XAC1479

Alternate gene names: 21242231

Gene position: 1707803-1708528 (Clockwise)

Preceding gene: 21242230

Following gene: 21242233

Centisome position: 33.0

GC content: 65.7

Gene sequence:

>726_bases
ATGTCCCCAGCAGCCACCAAGAGTCTTGCCGTTGCATTGGCCAGCGCCATTGCGCTGTCCGCTTGCGCCACCGGCGGCTC
GTATGTGCAGCGCGACCAATACGGCGAGCAGACCCAACAGCAGAATCGGACCGGCCGCAACGCCCTGATCGGTACCGCCA
TTGGTGTGGCTGCAGGCCTGCTCACCGGCGACAGCGCTACCGAGCGTCGTCAGCACGCAATGGTCGGCGCCGGCATCGGT
GCACTGAGCGGCGCGGCAATCGGCCAGTACCAGGATCGCCAGGAGCGCGCACTGCGTGAGCGCACCGCTAACACCGGGAT
CGAAGTGCAGCGCCAGGGCGACAACATCACCCTGAACCTGCCCGACGGCATCACCTTCGACTTCGGCAAGTCGGCATTGA
AGCCGCAGTTCTACAGCGCGCTCAATGGCGTGGCGTCTACCCTGCGCGAGTACAACCAGACCATGGTGGAAGTGGTCGGT
CATACCGACAGCGTCGGCAGCGACGCGGTCAACCAGCGTCTGTCCGAAGAACGCGCCGGCGCGGTCGCACAATATCTGAC
CGCACAAGGCGTGCAGCGTGAGCGCATGGAAACCATGGGCGCCGGCAAGCGTTACCCGATCGCCGATAACAGCACCGATG
CCGGCCGCGCACAGAACCGCCGCGTCGAAATCCGCCTGATCCCGCTGCGTGCGGAAGGCGCGGCCAGCAACGCCGGCATG
CGTTGA

Upstream 100 bases:

>100_bases
GCGCGATTGGAGGCTGGTTTCATCATGCGCCAGTCGCGTGGGCCTGTTTATCCTCGCGCACACGATTGAGCGCCGGATGG
CCCGGCCATAGGAGAACACC

Downstream 100 bases:

>100_bases
TGGGATGCAGTGAATCGTGGCGGGTCGGATGACTCACCCGCGATGTACTGATGTACGCAAAACAGGCCGCGAAAGCGGCC
TGTTTTTTTGCTGCATGGTG

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSPAATKSLAVALASAIALSACATGGSYVQRDQYGEQTQQQNRTGRNALIGTAIGVAAGLLTGDSATERRQHAMVGAGIG
ALSGAAIGQYQDRQERALRERTANTGIEVQRQGDNITLNLPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVG
HTDSVGSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQNRRVEIRLIPLRAEGAASNAGM
R

Sequences:

>Translated_241_residues
MSPAATKSLAVALASAIALSACATGGSYVQRDQYGEQTQQQNRTGRNALIGTAIGVAAGLLTGDSATERRQHAMVGAGIG
ALSGAAIGQYQDRQERALRERTANTGIEVQRQGDNITLNLPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVG
HTDSVGSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQNRRVEIRLIPLRAEGAASNAGM
R
>Mature_240_residues
SPAATKSLAVALASAIALSACATGGSYVQRDQYGEQTQQQNRTGRNALIGTAIGVAAGLLTGDSATERRQHAMVGAGIGA
LSGAAIGQYQDRQERALRERTANTGIEVQRQGDNITLNLPDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGH
TDSVGSDAVNQRLSEERAGAVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQNRRVEIRLIPLRAEGAASNAGMR

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=177, Percent_Identity=46.3276836158192, Blast_Score=147, Evalue=4e-37,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=35, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788957, Length=111, Percent_Identity=37.8378378378378, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25472; Mature: 25341

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAATKSLAVALASAIALSACATGGSYVQRDQYGEQTQQQNRTGRNALIGTAIGVAAGL
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LTGDSATERRQHAMVGAGIGALSGAAIGQYQDRQERALRERTANTGIEVQRQGDNITLNL
HCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEC
PDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGHTDSVGSDAVNQRLSEERAG
CCCCEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQNRRVEIRLIPLRAEGAASNAGM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCC
R
C
>Mature Secondary Structure 
SPAATKSLAVALASAIALSACATGGSYVQRDQYGEQTQQQNRTGRNALIGTAIGVAAGL
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LTGDSATERRQHAMVGAGIGALSGAAIGQYQDRQERALRERTANTGIEVQRQGDNITLNL
HCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEC
PDGITFDFGKSALKPQFYSALNGVASTLREYNQTMVEVVGHTDSVGSDAVNQRLSEERAG
CCCCEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AVAQYLTAQGVQRERMETMGAGKRYPIADNSTDAGRAQNRRVEIRLIPLRAEGAASNAGM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]