| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is hrpG [H]
Identifier: 21242018
GI number: 21242018
Start: 1444841
End: 1445632
Strand: Reverse
Name: hrpG [H]
Synonym: XAC1265
Alternate gene names: 21242018
Gene position: 1445632-1444841 (Counterclockwise)
Preceding gene: 77748573
Following gene: 21242005
Centisome position: 27.93
GC content: 61.11
Gene sequence:
>792_bases ATGAACGACCACTCTCCCCCCAACGCCGGATCGGTGTTCCTGTTGACGCAGGATGCGCGCCTGGTCTCGCAGGTCAACGC CAGCCTCGCACCGCTTGCGCGCAATGTCTCGACGTTTTCCGATGAACTGGAGCTTTTGCGTACGCTGCGGCATTCGCCGT GCGAGCTGCTGATCTTCGATGCCAGCTATGTCGCCGCCGATGACAGTTCACTGCTGGCATGGCAGCGCTGCCATAGCGGC CAGCCCACCCCGTTGATCGTGCTTGGACGTTTCGATTGCGCAGACAACATTCTGGCCTGGTATCGCGCAGGCGCGCAGGA AGTCCTTGCGCTGCCTTTCAATTCGCACGAGTTACACGTGCGCGCGGCGCTGGCGATATCGCCGGTGGCGCATGCCTGCC CGGAGACGCAGCACCTGAGCGTTGGTCCATACCGGTTGATCCGCGATGAAAATACCGTTTATCTGGACGGCAAGCCGATC GTATTGACCGCACGCGAGTTCTCGATTGCCTGGCTGCTCTTTTCCAGCCCCGGCGTGTGTTTCCGGCGTTGCCAACTGGC CAAGGCCGTCTGGGGCAGCCACACCGAATTCACCGACCGCACCATGGAGCAGCACATCTACAAGTTGCGCAAGAAACTGC AGCTGAGCAGTGACAGCAGCGCAGTGCGCATCAGAACCGTCTATTCGCACGGCTACAAGTTGGAGCTCGCGCTGCACGAT ACGGAGGCAACGACAATGAGCAAGGCCGTGAGCCCAAGCCTTGGCCCTGCACATCACGCAGCCGCCTGCTGA
Upstream 100 bases:
>100_bases GCAGCGATCTTTGAAGATGGATTTTGTCCTGGCATTGGCCGACCAGCACCGGCGCCCGCCCCATGCGTGGCTTCTACGCC GACACGCGAAGGCCGCCTAA
Downstream 100 bases:
>100_bases GCAAGCGCACCGCTGCCGATCTGCGATCTGCATTGCGCACTCTCGCTTGCGTTAAAGCGAAGGGTGTTTGATGACACGAT GAGCGTCGGCACGCTCTCAA
Product: HrpG protein
Products: NA
Alternate protein names: Staphylococcal respiratory response protein A [H]
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MNDHSPPNAGSVFLLTQDARLVSQVNASLAPLARNVSTFSDELELLRTLRHSPCELLIFDASYVAADDSSLLAWQRCHSG QPTPLIVLGRFDCADNILAWYRAGAQEVLALPFNSHELHVRAALAISPVAHACPETQHLSVGPYRLIRDENTVYLDGKPI VLTAREFSIAWLLFSSPGVCFRRCQLAKAVWGSHTEFTDRTMEQHIYKLRKKLQLSSDSSAVRIRTVYSHGYKLELALHD TEATTMSKAVSPSLGPAHHAAAC
Sequences:
>Translated_263_residues MNDHSPPNAGSVFLLTQDARLVSQVNASLAPLARNVSTFSDELELLRTLRHSPCELLIFDASYVAADDSSLLAWQRCHSG QPTPLIVLGRFDCADNILAWYRAGAQEVLALPFNSHELHVRAALAISPVAHACPETQHLSVGPYRLIRDENTVYLDGKPI VLTAREFSIAWLLFSSPGVCFRRCQLAKAVWGSHTEFTDRTMEQHIYKLRKKLQLSSDSSAVRIRTVYSHGYKLELALHD TEATTMSKAVSPSLGPAHHAAAC >Mature_263_residues MNDHSPPNAGSVFLLTQDARLVSQVNASLAPLARNVSTFSDELELLRTLRHSPCELLIFDASYVAADDSSLLAWQRCHSG QPTPLIVLGRFDCADNILAWYRAGAQEVLALPFNSHELHVRAALAISPVAHACPETQHLSVGPYRLIRDENTVYLDGKPI VLTAREFSIAWLLFSSPGVCFRRCQLAKAVWGSHTEFTDRTMEQHIYKLRKKLQLSSDSSAVRIRTVYSHGYKLELALHD TEATTMSKAVSPSLGPAHHAAAC
Specific function: Member of the two-component regulatory system srrA/srrB, which is involved in the global regulation of staphylococcal virulence factors in response to environmental oxygen levels. SrrA binds to the agr, spa and tst promoters and represses their transcript
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1789402, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788394, Length=194, Percent_Identity=28.8659793814433, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI87082012, Length=204, Percent_Identity=27.4509803921569, Blast_Score=62, Evalue=4e-11,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 29042; Mature: 29042
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDHSPPNAGSVFLLTQDARLVSQVNASLAPLARNVSTFSDELELLRTLRHSPCELLIFD CCCCCCCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE ASYVAADDSSLLAWQRCHSGQPTPLIVLGRFDCADNILAWYRAGAQEVLALPFNSHELHV CEEEECCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCEEEE RAALAISPVAHACPETQHLSVGPYRLIRDENTVYLDGKPIVLTAREFSIAWLLFSSPGVC EEEEEECHHHHHCCCCCCCCCCCEEEEECCCEEEECCCEEEEEECCEEEEEEEECCCCHH FRRCQLAKAVWGSHTEFTDRTMEQHIYKLRKKLQLSSDSSAVRIRTVYSHGYKLELALHD HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEEC TEATTMSKAVSPSLGPAHHAAAC CCHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MNDHSPPNAGSVFLLTQDARLVSQVNASLAPLARNVSTFSDELELLRTLRHSPCELLIFD CCCCCCCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE ASYVAADDSSLLAWQRCHSGQPTPLIVLGRFDCADNILAWYRAGAQEVLALPFNSHELHV CEEEECCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCEEEE RAALAISPVAHACPETQHLSVGPYRLIRDENTVYLDGKPIVLTAREFSIAWLLFSSPGVC EEEEEECHHHHHCCCCCCCCCCCEEEEECCCEEEECCCEEEEEECCEEEEEEEECCCCHH FRRCQLAKAVWGSHTEFTDRTMEQHIYKLRKKLQLSSDSSAVRIRTVYSHGYKLELALHD HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEEC TEATTMSKAVSPSLGPAHHAAAC CCHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA