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The map label for this gene is yfiK [H]

Identifier: 21241983

GI number: 21241983

Start: 1407686

End: 1408330

Strand: Direct

Name: yfiK [H]

Synonym: XAC1229

Alternate gene names: 21241983

Gene position: 1407686-1408330 (Clockwise)

Preceding gene: 21241982

Following gene: 21241984

Centisome position: 27.2

GC content: 65.43

Gene sequence:

>645_bases
GTGATGATCCGTGTGTGCCTGGTCGACGATCAAACCCTGGTGCGCCAGGGGATCCGCTCGCTGTTGGCGCTGGACGACGG
CATCGAGGTGGTGGCCGAGGCCTCCGACGGCAAGCAGGCGGTGGAGCAGATTCCGCAAATCCAGCCGGACGTGGTGCTGA
TGGACATGCGCATGCCGGTGATGTCCGGGCTGGAAGCGCTGCAGATGCTTTCGCGCAACGGCGCCCTGCCGCCGACGATC
ATCCTGACCACCTTCGACGACGACCAACTGGTGCTGGCCGGGCTCAAGGCCGGTGCCAAGGGCTATCTGCTCAAGGACGT
CTCGCTGGAACAACTGGTCGGCGCCATCCGCACCGTCGCCGACGGCGGCTCGCTGGTGCAGCCGGCGGTGACCCAGCGCC
TGCTGTCGGGCCTGGAGCACATGCGTAACGAATTCGTCAGCCTGGACCGACCCGATCCGCTCACCGACCGCGAGACCGAG
ATCCTGCGGCTGATGGCGAGCGGGTTTTCCAACAAGGAAATCGCCAACTCGCTGGGCGTGGCCGAAGGCACCATCAAGAA
TCACGTCTCCAACATCCTCTCCAAGCTCGGCGTACGCGACCGCACCCGCGCGGTGCTGAAAGCGTTCGAGCTGCAGCTGG
TGTGA

Upstream 100 bases:

>100_bases
AGCTCGAGATTCAAACCCGGCGGGGTGACGGCTTCGGCCTGCGCATCGCTGTTCCAGGCGCGCCGGCACTGATGCCTGCG
GCCGTGACCCAAGGAGTGTT

Downstream 100 bases:

>100_bases
GCCCGGCGCCCGCGCCCGCCTGCAGCAGGGGCGGGACTCGCATTCAGGCCGCTGCAGCGTCGGTCGGACCGCGAGACGGG
CGGCCCAATGCCGCCTGGCA

Product: two-component system regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MMIRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQIQPDVVLMDMRMPVMSGLEALQMLSRNGALPPTI
ILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPLTDRETE
ILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV

Sequences:

>Translated_214_residues
MMIRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQIQPDVVLMDMRMPVMSGLEALQMLSRNGALPPTI
ILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPLTDRETE
ILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV
>Mature_214_residues
MMIRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQIQPDVVLMDMRMPVMSGLEALQMLSRNGALPPTI
ILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPLTDRETE
ILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=205, Percent_Identity=43.4146341463415, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1790102, Length=209, Percent_Identity=37.3205741626794, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788222, Length=201, Percent_Identity=37.3134328358209, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787473, Length=186, Percent_Identity=36.5591397849462, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788712, Length=193, Percent_Identity=25.9067357512953, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1786747, Length=200, Percent_Identity=26.5, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=34.8623853211009, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082052, Length=119, Percent_Identity=33.6134453781513, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367223, Length=153, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1788546, Length=201, Percent_Identity=27.363184079602, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23255; Mature: 23255

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQIQPDVVLMDMRMPV
CEEEEEEECCHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHCCCCCCCEEEEECCCHH
MSGLEALQMLSRNGALPPTIILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTVA
HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEHHCCCCCEEECCCCHHHHHHHHHHHH
DGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCC
AEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMIRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQIQPDVVLMDMRMPV
CEEEEEEECCHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHCCCCCCCEEEEECCCHH
MSGLEALQMLSRNGALPPTIILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTVA
HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEHHCCCCCEEECCCCHHHHHHHHHHHH
DGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCC
AEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]