BacMap

Definition	Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome.
Accession	NC_003919
Length	5,175,554

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The map label for this gene is yjgI [H]

Identifier: 21241914

GI number: 21241914

Start: 1323774

End: 1324487

Strand: Reverse

Name: yjgI [H]

Synonym: XAC1160

Alternate gene names: 21241914

Gene position: 1324487-1323774 (Counterclockwise)

Preceding gene: 77748563

Following gene: 21241907

Centisome position: 25.59

GC content: 69.33

Gene sequence:

>714_bases
ATGTCAGCGTTCAAAGACAAGTCGGTATTGGTGCTCGGCGGCAGCCGGGGGATTGGGGCCGCGATCGTGCGGCGCTTCGT
AGCCGATGGCGCGCGAGTGACGTTTACCTACGCCGGCTCCGCCGAGGCGGCGCAGCGCCTGGCCGGCGACACCGGCAGCA
GCGCGGTGCTGGCCGACAGCGCCGATCGCGATGCGGTCATCGACACGGTGCGACGCAGCGGGCCGCTGGATGTCCTGGTG
GTCAACTCCGGCATCGCCTTGTTCGGCGATGCGCTGGACCAGGATCCGGACGCGGTGGACCGGCTGTTCCGCATCAACGT
GCACGCGCCCTACCACGCCGCCGTGGAGGCAGCGCGGCAGATGCCGCCCGGCGGGCGGATCATCGTGATCGGCTCGGTCA
ACGGCGACCGCATGCCGCTGCCCGGCATGGCGTCCTACGCGCTGAGCAAATCCGCGCTGCAAGGGCTTGCGCGCGGGCTG
GCGCGCGACTTCGGGCCGCGCGGCATCACCATCAACGTGGTGCAACCGGGCCCGATCGATACCGACGCCAATCCGGAAAA
CGGGCCGATGAAAGACCTGATGCACAGCTTCATGGCGATCAAACGCCACGGCCGCGCCGACGAAGTCGCCGGCATGGTGG
CCTGGCTGGCGGGCCCGGAAGCGAGCTTCGTGACCGGCGCGATGCATACGATCGATGGTGCGTTCGGGGCGTGA

Upstream 100 bases:

>100_bases
GCCGCGGGCCCGGGGGTTCTCTGTAGTCATAGTTACAAAATCCTTGACGGCAGGCGAGAAATATTATGTATTACTCGCTA
CATTAATTGCGAGGTGATGC

Downstream 100 bases:

>100_bases
CGCGTCGTCGCTTGGATTGATGCCACTGCAGCTCGACATGTAGCGCAACGGATGGCGGCAAGCGCCCTCCGTCGACGTGC
AGGGCGAGCTGCTGTTGCAT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSAFKDKSVLVLGGSRGIGAAIVRRFVADGARVTFTYAGSAEAAQRLAGDTGSSAVLADSADRDAVIDTVRRSGPLDVLV
VNSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQMPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGL
ARDFGPRGITINVVQPGPIDTDANPENGPMKDLMHSFMAIKRHGRADEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

Sequences:

>Translated_237_residues
MSAFKDKSVLVLGGSRGIGAAIVRRFVADGARVTFTYAGSAEAAQRLAGDTGSSAVLADSADRDAVIDTVRRSGPLDVLV
VNSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQMPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGL
ARDFGPRGITINVVQPGPIDTDANPENGPMKDLMHSFMAIKRHGRADEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>Mature_236_residues
SAFKDKSVLVLGGSRGIGAAIVRRFVADGARVTFTYAGSAEAAQRLAGDTGSSAVLADSADRDAVIDTVRRSGPLDVLVV
NSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQMPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGLA
RDFGPRGITINVVQPGPIDTDANPENGPMKDLMHSFMAIKRHGRADEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=242, Percent_Identity=30.9917355371901, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=29.1139240506329, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=29.5546558704453, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.6010928961749, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=238, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=218, Percent_Identity=27.9816513761468, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI66933014, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=28.8617886178862, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=78.9029535864979, Blast_Score=388, Evalue=1e-109,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=34.8547717842324, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=31.1475409836066, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=31.496062992126, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI2367175, Length=238, Percent_Identity=33.1932773109244, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=29.2682926829268, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=25.7936507936508, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=29.2682926829268, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=31.0483870967742, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=31.1284046692607, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=32.520325203252, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=28.4552845528455, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=29.0076335877863, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=27.1255060728745, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=255, Percent_Identity=28.2352941176471, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=28.4552845528455, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=26.4367816091954, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=27.8195488721804, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=29.2307692307692, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=28.0769230769231, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=252, Percent_Identity=26.984126984127, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=26.5384615384615, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=28.6792452830189, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=26.6393442622951, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=26.7175572519084, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=27.4436090225564, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=27.0676691729323, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=30.1507537688442, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=27.1062271062271, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=245, Percent_Identity=22.8571428571429, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=30.6451612903226, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=30.4, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=31.3492063492063, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=31.6872427983539, Blast_Score=96, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=30.5785123966942, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644337, Length=173, Percent_Identity=32.3699421965318, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24643142, Length=240, Percent_Identity=27.5, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=27.4590163934426, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24663911, Length=244, Percent_Identity=27.4590163934426, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24578; Mature: 24447

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFKDKSVLVLGGSRGIGAAIVRRFVADGARVTFTYAGSAEAAQRLAGDTGSSAVLADS
CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCEEEECC
ADRDAVIDTVRRSGPLDVLVVNSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQ
CCCHHHHHHHHCCCCEEEEEECCCCEEECHHCCCCHHHHHHEEEEECCCCHHHHHHHHHH
MPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGLARDFGPRGITINVVQPGPID
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
TDANPENGPMKDLMHSFMAIKRHGRADEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAFKDKSVLVLGGSRGIGAAIVRRFVADGARVTFTYAGSAEAAQRLAGDTGSSAVLADS
CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCEEEECC
ADRDAVIDTVRRSGPLDVLVVNSGIALFGDALDQDPDAVDRLFRINVHAPYHAAVEAARQ
CCCHHHHHHHHCCCCEEEEEECCCCEEECHHCCCCHHHHHHEEEEECCCCHHHHHHHHHH
MPPGGRIIVIGSVNGDRMPLPGMASYALSKSALQGLARGLARDFGPRGITINVVQPGPID
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
TDANPENGPMKDLMHSFMAIKRHGRADEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]