| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21241904
Identifier: 21241904
GI number: 21241904
Start: 1310988
End: 1311470
Strand: Reverse
Name: 21241904
Synonym: XAC1150
Alternate gene names: NA
Gene position: 1311470-1310988 (Counterclockwise)
Preceding gene: 21241907
Following gene: 21241903
Centisome position: 25.34
GC content: 63.98
Gene sequence:
>483_bases ATGACCATCCACGTTGGTGACCGCATTCCCGAAGTCGTGCTCAAGCGCCTGCGCGACGGCATCGAGGCCGTCGACACCCA TAGCCTGTTCGCAGGCCGCAAGGTGCTGCTGTTCGCGGTGCCGGGGGCCTTTACCCCCACCTGCTCGGCCAAGCACCTGC CGGGCTATGTGGAACACTTCGAGCAATTCCGCAAGCGCGGTATCGAAGTGCTGTGCACCGCGGTCAACGACCCATTCGTG ATGCAGGCCTGGGGACGCAGCCAGTTGATTCCCGACGGCCTGCACCTGTTACCCGACGGCAACGCCGAACTGGCGCGCGC CCTGGGCCTTGAAATCGACGCCAGCGGGTCGGGCATGGGCCTGCGCTCGCGCCGCTACGCGCTGTATGCAGACGACGCGG TGGTCAAGGCGTTGTTTGTTGAAGAACCCGGCGAATTCAAAGTCTCTGCAGCCGATTACGTGCTGCAGCACCTGCCGGAT TGA
Upstream 100 bases:
>100_bases CATGTGCGTCAGATAGGCGTGGCCGGACGGATTTCAAGCGCGTTGACGCGCTTTTCCCCTGCCCCTTTCTAGAATCCGTT CAGCCACAGGAGCCTGCCGC
Downstream 100 bases:
>100_bases ATACCCCTTTCTCCCATCCACCCAGAAGGAAGACGGCCAGCCATGTCTGATCAGCCAGCCACCAACACTCCCGCCGGTAT CACCGACACTGCCACCTTGC
Product: peroxiredoxin
Products: NA
Alternate protein names: Thioredoxin reductase [H]
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MTIHVGDRIPEVVLKRLRDGIEAVDTHSLFAGRKVLLFAVPGAFTPTCSAKHLPGYVEHFEQFRKRGIEVLCTAVNDPFV MQAWGRSQLIPDGLHLLPDGNAELARALGLEIDASGSGMGLRSRRYALYADDAVVKALFVEEPGEFKVSAADYVLQHLPD
Sequences:
>Translated_160_residues MTIHVGDRIPEVVLKRLRDGIEAVDTHSLFAGRKVLLFAVPGAFTPTCSAKHLPGYVEHFEQFRKRGIEVLCTAVNDPFV MQAWGRSQLIPDGLHLLPDGNAELARALGLEIDASGSGMGLRSRRYALYADDAVVKALFVEEPGEFKVSAADYVLQHLPD >Mature_159_residues TIHVGDRIPEVVLKRLRDGIEAVDTHSLFAGRKVLLFAVPGAFTPTCSAKHLPGYVEHFEQFRKRGIEVLCTAVNDPFVM QAWGRSQLIPDGLHLLPDGNAELARALGLEIDASGSGMGLRSRRYALYADDAVVKALFVEEPGEFKVSAADYVLQHLPD
Specific function: Unknown
COG id: COG0678
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI6912238, Length=160, Percent_Identity=38.125, Blast_Score=100, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6323138, Length=133, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=7e-15, Organism=Drosophila melanogaster, GI78706776, Length=145, Percent_Identity=42.0689655172414, Blast_Score=109, Evalue=1e-24, Organism=Drosophila melanogaster, GI78709078, Length=145, Percent_Identity=42.0689655172414, Blast_Score=109, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013740 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF08534 Redoxin [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 17554; Mature: 17423
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIHVGDRIPEVVLKRLRDGIEAVDTHSLFAGRKVLLFAVPGAFTPTCSAKHLPGYVEHF CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHH EQFRKRGIEVLCTAVNDPFVMQAWGRSQLIPDGLHLLPDGNAELARALGLEIDASGSGMG HHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCCEECCCCCHHHHHHHCCEEECCCCCCC LRSRRYALYADDAVVKALFVEEPGEFKVSAADYVLQHLPD CCCCEEEEEECHHHHHHHEECCCCCEEEHHHHHHHHHCCC >Mature Secondary Structure TIHVGDRIPEVVLKRLRDGIEAVDTHSLFAGRKVLLFAVPGAFTPTCSAKHLPGYVEHF EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHH EQFRKRGIEVLCTAVNDPFVMQAWGRSQLIPDGLHLLPDGNAELARALGLEIDASGSGMG HHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCCEECCCCCHHHHHHHCCEEECCCCCCC LRSRRYALYADDAVVKALFVEEPGEFKVSAADYVLQHLPD CCCCEEEEEECHHHHHHHEECCCCCEEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]