| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yebA [H]
Identifier: 21241869
GI number: 21241869
Start: 1264000
End: 1265952
Strand: Reverse
Name: yebA [H]
Synonym: XAC1114
Alternate gene names: 21241869
Gene position: 1265952-1264000 (Counterclockwise)
Preceding gene: 21241870
Following gene: 21241868
Centisome position: 24.46
GC content: 68.1
Gene sequence:
>1953_bases ATGACTGAGCCCGCCCTCCCGATCAGCCAGGCCAGCCGCGCCTGGGTGCTGGCCACCAGTTGGCTGGCATTGACGCCGTT GCTGTTGCAGTTGCCGGGCCTGCTTGCGGCCACTGTCGCGGTGGCCGCGGTGCTGGTCGGCGTGCTGAGCTGGCGCGGCA CCTTGATGGCGCCGGTGCGGCTGTTGTTGGTGATCGCAATGCTGGCGGCGGTGTATTGGCAGATCGGCATGCGCTTCGGC CGCGACACCGGCTGCGCGGTGCTGGCATCGATGCTGGCGATCAAGGCCTCCGAGCTGCGCACCCTGCGCGATGCACGCAG CCTGTTGGGTTTTGCGTTGTTCGCACCGTTTGCCGCCTTTCTGCTCGACCAGGGCCCGGCGACGATGGGCCTGGCGCTGC TGGCGGTGGTCAGCGCCTTGCTGAGCATGCAGCGGCTGGCCGACGAAGAACACCATACCGCCACGCCGGCCCTGCGCCTG CAATTGCGCGGTATCGGCAAGCTGGTTGCCATCGGCGTGCCGCTGGCCCTGGCCACGTTCTGGTTGCTGCCGCGCCTGAG TGCGCCGCTGTGGGGCGTGCCCGAACGCGCGCTCTCCCGGCCTGGCTTGTCGGACAACATGTCGCCAGGCGAATGGATCG ACCTGATGGCCGACGACAGCCCGGCCTTGCGCGTGCAATTCGCCGGCAAGGCGCCACCGCCGCAACAGCGCTATTGGCGC GGTCCGGTGATGTGGGACTTCGACGGCCGCACCTGGCAGCGCGCGCGCTGGACCGGCCGCGCCCAGCCCGCTTCGGTCAC CGCAGGCCCGCAAACCTACCGTTACCGCCTGGATTACGAGCCCACCGATCGCCGCCAACTGGTGTCGCTGGATCTGCCTA CCCAGGGCGTGCCCAACGCCGAGTTATCGCCCGACTACGAACTGTTCGCGCAACGGCCGTTGAGTGCACTGACCCGCTGG GACCTGCAATCGGCACCGCCAACGCGCTTCGATGCCGACCTGCCCGATCAGTTGCGCAAGCGTGCCCTTGCCCTGCCGCC CGGTTTCAATCCGCGCACGCTGACGCTGGCACGGCAATGGCGTCGCGAGGCCGGCAACAACGACGATGCGGTGGTGCAGC GCGCGCTGCAGTGGATCACCCGCGAATTCGCCTACACGCTCGAAACGCCGCTGCTCGGCCGCAACAGCGTCGACGAATTC CTGTTTCAGCAAAAGGCCGGTTTCTGCGAACACTTCAGCTCCTCGTTCGTGGTGCTGATGCGCGCGGCCGGCATCCCGGC GCGCGTGGTGACCGGGTACGCCGGCGGCACTTACAACCGGCTGGGCAATTACTGGGTGGTACGGCGCATGGATGCGCATG CCTGGACCGAAGTCTGGCTGGCCGGGCGTGGCTGGGCGCGCGTGGACCCCACCGCCGCAGTGGCGCCGGAACGCATCTAC GACACGCTCGAAGATCGCCTGCAAACCGGCGGCGGCAACGACTTCGCCGACCTTGGCACATGGGCCAGCCTGGGCCAGGT CAGCGACTGGCTGCGGCGAGGCTGGAACGAGCTGGTGCTGTCCTTCGATGCCGATCGCCAGCAACGGCTGCTGCAACCCT TCGGCATCGATCGCCTGGACACCTCGCAACTGGCCGCCATCTTCGGCGTGTTCGCGGTGAGCGCGCTGGCGTGGATGGGC TGGCTGCTGGCACGGGGCGAACGTGAGCGCGACCCGTTGCTGCGCGCCTGGCACCGACTGAGCCACCGCTACCGCAAGCT CGGCCTTGCCCGTGAACCGCACGAACCGGCCAGTGTGTGGGCGCAACGTGTCGCCCGCTCACACCCGAATACGCCCCTGT TGGCACTCAGCCAACGTTTCGCTGCCGCGCGATACGCTGGCGCTGATTCGGACAGCGCCCCTCTCTTGAAAGACTTGCTG CAGCATCGCCCGCGAACCGGAGCTTCCTCATGA
Upstream 100 bases:
>100_bases CGCCGTTATCGCCTGCTGCTGCCTGGCCAGCCACCGTTAGGTCCCGCGCAGGGACCTTCGCACCACCACCTGTGCCAACG CGCCCTGGCCCTGCTTCCGC
Downstream 100 bases:
>100_bases GTACCCGTTTTCTTGTTCCTCTTATCGCTGTGCTCGGGCTCGCAGCCTGCGCCACCGCACCCAAGCCGCTGCAGGGCCAG TTCCCCGCGGTCAGTCCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 650; Mature: 649
Protein sequence:
>650_residues MTEPALPISQASRAWVLATSWLALTPLLLQLPGLLAATVAVAAVLVGVLSWRGTLMAPVRLLLVIAMLAAVYWQIGMRFG RDTGCAVLASMLAIKASELRTLRDARSLLGFALFAPFAAFLLDQGPATMGLALLAVVSALLSMQRLADEEHHTATPALRL QLRGIGKLVAIGVPLALATFWLLPRLSAPLWGVPERALSRPGLSDNMSPGEWIDLMADDSPALRVQFAGKAPPPQQRYWR GPVMWDFDGRTWQRARWTGRAQPASVTAGPQTYRYRLDYEPTDRRQLVSLDLPTQGVPNAELSPDYELFAQRPLSALTRW DLQSAPPTRFDADLPDQLRKRALALPPGFNPRTLTLARQWRREAGNNDDAVVQRALQWITREFAYTLETPLLGRNSVDEF LFQQKAGFCEHFSSSFVVLMRAAGIPARVVTGYAGGTYNRLGNYWVVRRMDAHAWTEVWLAGRGWARVDPTAAVAPERIY DTLEDRLQTGGGNDFADLGTWASLGQVSDWLRRGWNELVLSFDADRQQRLLQPFGIDRLDTSQLAAIFGVFAVSALAWMG WLLARGERERDPLLRAWHRLSHRYRKLGLAREPHEPASVWAQRVARSHPNTPLLALSQRFAAARYAGADSDSAPLLKDLL QHRPRTGASS
Sequences:
>Translated_650_residues MTEPALPISQASRAWVLATSWLALTPLLLQLPGLLAATVAVAAVLVGVLSWRGTLMAPVRLLLVIAMLAAVYWQIGMRFG RDTGCAVLASMLAIKASELRTLRDARSLLGFALFAPFAAFLLDQGPATMGLALLAVVSALLSMQRLADEEHHTATPALRL QLRGIGKLVAIGVPLALATFWLLPRLSAPLWGVPERALSRPGLSDNMSPGEWIDLMADDSPALRVQFAGKAPPPQQRYWR GPVMWDFDGRTWQRARWTGRAQPASVTAGPQTYRYRLDYEPTDRRQLVSLDLPTQGVPNAELSPDYELFAQRPLSALTRW DLQSAPPTRFDADLPDQLRKRALALPPGFNPRTLTLARQWRREAGNNDDAVVQRALQWITREFAYTLETPLLGRNSVDEF LFQQKAGFCEHFSSSFVVLMRAAGIPARVVTGYAGGTYNRLGNYWVVRRMDAHAWTEVWLAGRGWARVDPTAAVAPERIY DTLEDRLQTGGGNDFADLGTWASLGQVSDWLRRGWNELVLSFDADRQQRLLQPFGIDRLDTSQLAAIFGVFAVSALAWMG WLLARGERERDPLLRAWHRLSHRYRKLGLAREPHEPASVWAQRVARSHPNTPLLALSQRFAAARYAGADSDSAPLLKDLL QHRPRTGASS >Mature_649_residues TEPALPISQASRAWVLATSWLALTPLLLQLPGLLAATVAVAAVLVGVLSWRGTLMAPVRLLLVIAMLAAVYWQIGMRFGR DTGCAVLASMLAIKASELRTLRDARSLLGFALFAPFAAFLLDQGPATMGLALLAVVSALLSMQRLADEEHHTATPALRLQ LRGIGKLVAIGVPLALATFWLLPRLSAPLWGVPERALSRPGLSDNMSPGEWIDLMADDSPALRVQFAGKAPPPQQRYWRG PVMWDFDGRTWQRARWTGRAQPASVTAGPQTYRYRLDYEPTDRRQLVSLDLPTQGVPNAELSPDYELFAQRPLSALTRWD LQSAPPTRFDADLPDQLRKRALALPPGFNPRTLTLARQWRREAGNNDDAVVQRALQWITREFAYTLETPLLGRNSVDEFL FQQKAGFCEHFSSSFVVLMRAAGIPARVVTGYAGGTYNRLGNYWVVRRMDAHAWTEVWLAGRGWARVDPTAAVAPERIYD TLEDRLQTGGGNDFADLGTWASLGQVSDWLRRGWNELVLSFDADRQQRLLQPFGIDRLDTSQLAAIFGVFAVSALAWMGW LLARGERERDPLLRAWHRLSHRYRKLGLAREPHEPASVWAQRVARSHPNTPLLALSQRFAAARYAGADSDSAPLLKDLLQ HRPRTGASS
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002931 [H]
Pfam domain/function: PF01841 Transglut_core [H]
EC number: NA
Molecular weight: Translated: 72201; Mature: 72070
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPALPISQASRAWVLATSWLALTPLLLQLPGLLAATVAVAAVLVGVLSWRGTLMAPVR CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LLLVIAMLAAVYWQIGMRFGRDTGCAVLASMLAIKASELRTLRDARSLLGFALFAPFAAF HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLDQGPATMGLALLAVVSALLSMQRLADEEHHTATPALRLQLRGIGKLVAIGVPLALATF HHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHH WLLPRLSAPLWGVPERALSRPGLSDNMSPGEWIDLMADDSPALRVQFAGKAPPPQQRYWR HHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHCC GPVMWDFDGRTWQRARWTGRAQPASVTAGPQTYRYRLDYEPTDRRQLVSLDLPTQGVPNA CCEEECCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCC ELSPDYELFAQRPLSALTRWDLQSAPPTRFDADLPDQLRKRALALPPGFNPRTLTLARQW CCCCCHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH RREAGNNDDAVVQRALQWITREFAYTLETPLLGRNSVDEFLFQQKAGFCEHFSSSFVVLM HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RAAGIPARVVTGYAGGTYNRLGNYWVVRRMDAHAWTEVWLAGRGWARVDPTAAVAPERIY HHCCCCHHHHCCCCCCCHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHCCHHHHH DTLEDRLQTGGGNDFADLGTWASLGQVSDWLRRGWNELVLSFDADRQQRLLQPFGIDRLD HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHHCCCCCCC TSQLAAIFGVFAVSALAWMGWLLARGERERDPLLRAWHRLSHRYRKLGLAREPHEPASVW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH AQRVARSHPNTPLLALSQRFAAARYAGADSDSAPLLKDLLQHRPRTGASS HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure TEPALPISQASRAWVLATSWLALTPLLLQLPGLLAATVAVAAVLVGVLSWRGTLMAPVR CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LLLVIAMLAAVYWQIGMRFGRDTGCAVLASMLAIKASELRTLRDARSLLGFALFAPFAAF HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLDQGPATMGLALLAVVSALLSMQRLADEEHHTATPALRLQLRGIGKLVAIGVPLALATF HHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHH WLLPRLSAPLWGVPERALSRPGLSDNMSPGEWIDLMADDSPALRVQFAGKAPPPQQRYWR HHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHCC GPVMWDFDGRTWQRARWTGRAQPASVTAGPQTYRYRLDYEPTDRRQLVSLDLPTQGVPNA CCEEECCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCC ELSPDYELFAQRPLSALTRWDLQSAPPTRFDADLPDQLRKRALALPPGFNPRTLTLARQW CCCCCHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH RREAGNNDDAVVQRALQWITREFAYTLETPLLGRNSVDEFLFQQKAGFCEHFSSSFVVLM HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RAAGIPARVVTGYAGGTYNRLGNYWVVRRMDAHAWTEVWLAGRGWARVDPTAAVAPERIY HHCCCCHHHHCCCCCCCHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHCCHHHHH DTLEDRLQTGGGNDFADLGTWASLGQVSDWLRRGWNELVLSFDADRQQRLLQPFGIDRLD HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHHCCCCCCC TSQLAAIFGVFAVSALAWMGWLLARGERERDPLLRAWHRLSHRYRKLGLAREPHEPASVW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH AQRVARSHPNTPLLALSQRFAAARYAGADSDSAPLLKDLLQHRPRTGASS HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969499; 9384377 [H]