| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is plcN [H]
Identifier: 21241789
GI number: 21241789
Start: 1182593
End: 1184674
Strand: Direct
Name: plcN [H]
Synonym: XAC1024
Alternate gene names: 21241789
Gene position: 1182593-1184674 (Clockwise)
Preceding gene: 21241786
Following gene: 21241790
Centisome position: 22.85
GC content: 66.23
Gene sequence:
>2082_bases ATGACGTCTTCCTCCTCGCGTCGCGATTTCCTCAAGCGCGTTGCTGCGCTCACTGCTGCCGGCGCCTTGCCGTCTTCGAT CGGTCGCGCACTCGCGCTGCCGGCCAACGCGCGGACCGGCACGTTGCGCGATCTCGAACATGTGGTGATCCTGATGCAGG AAAACCGCTCGTTCGATCATTATTTCGGTGCGCTACGCGGCGTGCGCGGCTTTGGCGATCCGCGCGCGCTGCAACTGCGC GACGGCCATGCGGTATGGAGTCAGCCCACGCCCGACGGACGACGCGTGCTGCCATTCGCGTTCGATTCGCAAAATACCTG CGCGCCCTTGATCAAGAGTCTGGATCATTCCTGGAAGGCCGGTCACGGGCAGGACCCGGCACGCTGGGCCGAATACGATG CGTGGGTGCCGTACAAGGGGGAATTGACGATGGGATATTTCCAGCGTCACGACATCCCGTACTACCACGCGCTTGCCGAC GCGTTCACCATCTGCGACGGCTATTACTGCTCGCTGCACGGGCCGACCAATCCCAACCGCATGTATCTGTTCACCGGTAC CAGCGGCCCAAGCGTGGGCAACGTCGGCGCGCAGGCGGTCACCAATGCCGACGATGGCAACTGGACCGCCGACATGGCGC GCGACAAGCCCGGCTACGCAGCGCTGCAGTGGACCACGTACGCGCAGCGGTTGCAGGCTGCCGGCGTGGACTGGCGCGTG TATCAGGAATACGACAACTTCGGCTGCAACTCGCTGGCGTATTTCTCGCACTATCGCGATCTACGCACCGACGACGAACG TTACCTGCGTGCACGTGCATGCGTGCCCGGTTCCACCGCGGGCAATGCCGCCACCACCCAGGCCGAGCACCTGGTCGCCG CGATCGCTGCCGATGTGCGGGCCAATCGCCTGCCGCAGGTGTCGTGGGTCATTCCGCCGACTGCGTATTGCGAACACCCC GAAGCGCCGCCTGCCTATGGCGAGTCCCTGGTGGCGCGTCTGATCGATGCGCTCACCGCCAATCCCGAGGTGTGGGCCAA GACGGCGCTGATCATCAATTACGACGAGAACGACGGCTTCTTCGATCACGTGCCCGCGCCGTTGCCGGCATTGGACGCAC GCATGGGGCGCAGCAATGTCGACACGCATGGCGAGGTCTACGATGGCGTGCCGATCGGCCTGGGCATTCGCGTGCCGATG CTGGTGATCTCGCCGTGGACGCGTGGTGGCTGGGTCAACTCGCAGGTGTTCGATCACACCTCGGTGCTGCGTTTGCTGGA ACGCCGCTTCGGCGTGGCCGAGCCCAACATCAGCCCGTGGCGGCGTGCGGTCAGTGGCGATCTCACCAGCGTGTTCGACT TCCGCAAGCCGGACGATTCGGCGTTGAGCGCATTGCCGTCGGTCGACGACTATCGGGCACGTACCGCTGCCGTGCGCGAT AAACCGCTACCGTCTGCGCCTGCTGCCGCAACGATGCCACGGCAGGAACCGGGGCAGCGGCCGGCGCGCGCATTGCCATA TGCCTTGCAGGTGCATGCACGCGTGCAAGAGGGTGCCGCCGTGCAGTTGCAGTTCGTCAACAGCGGCGCGGCGGCTGCGG CGTTCAACGTCTACAACAGCGCGGCCGGCGGCGGCCCCTGGTATTACACGGTGCTGCCCGGCACGCAACTGGACGATGCG CCGATTGGGGCCACGCACGAGGGTGCATACGCCTTGCGCGTGCACGGGCCCAATGGCTTCTTGCGCGAGTTCGCCGGGCA GGTGCCGCGCGCCTCTGCGCCATCGGCCGCGCCATGGGTGGAGGCGCGACAGGAGGGCGACGCCTTGGTGCTGGAAATCG GCAATGCCGGGCAGCGCGCCTGCACCGTGCAGCTGCGTGCGCTGGACTACGCAGACCCAAGTGCGCGCACTTTGTCGTTG GCCGCAGGTCAGCGCGAGACCATTCGCCTGGCGCTTGCCGCCAGCGATCACTGGTACGACCTGGTGGTGGAACAACCGGG CAGCGCCTTCCGCCGCCGTCTGGCCGGGCATCTGGAAACCGGCAGGCCTAGCCGCAGCGATCCCGCATTCGGCCGCGTCT AG
Upstream 100 bases:
>100_bases GTCGCTGTCGCAAAACTGTCGTGCTCGCCCGCTATACGTGTCGTGTCCAGCCGCGCTGCGCGGTGACAAAGGCACCACTT TCTTTGCAGGTTCTGCCGCC
Downstream 100 bases:
>100_bases CCAGCGCTCGGCCGCGGTACGCAGCAGGCGAATCCGCCGACGCCTGCTGCGCGGCAAACGTGCGCGAGTGCGTGTGGAGC GGGCGCGTGCCGACCCTGCC
Product: non-hemolytic phospholipase C
Products: NA
Alternate protein names: PLC-N; Phosphatidylcholine cholinephosphohydrolase; Phosphatidylcholine-hydrolyzing phospholipase C; PC-PLC [H]
Number of amino acids: Translated: 693; Mature: 692
Protein sequence:
>693_residues MTSSSSRRDFLKRVAALTAAGALPSSIGRALALPANARTGTLRDLEHVVILMQENRSFDHYFGALRGVRGFGDPRALQLR DGHAVWSQPTPDGRRVLPFAFDSQNTCAPLIKSLDHSWKAGHGQDPARWAEYDAWVPYKGELTMGYFQRHDIPYYHALAD AFTICDGYYCSLHGPTNPNRMYLFTGTSGPSVGNVGAQAVTNADDGNWTADMARDKPGYAALQWTTYAQRLQAAGVDWRV YQEYDNFGCNSLAYFSHYRDLRTDDERYLRARACVPGSTAGNAATTQAEHLVAAIAADVRANRLPQVSWVIPPTAYCEHP EAPPAYGESLVARLIDALTANPEVWAKTALIINYDENDGFFDHVPAPLPALDARMGRSNVDTHGEVYDGVPIGLGIRVPM LVISPWTRGGWVNSQVFDHTSVLRLLERRFGVAEPNISPWRRAVSGDLTSVFDFRKPDDSALSALPSVDDYRARTAAVRD KPLPSAPAAATMPRQEPGQRPARALPYALQVHARVQEGAAVQLQFVNSGAAAAAFNVYNSAAGGGPWYYTVLPGTQLDDA PIGATHEGAYALRVHGPNGFLREFAGQVPRASAPSAAPWVEARQEGDALVLEIGNAGQRACTVQLRALDYADPSARTLSL AAGQRETIRLALAASDHWYDLVVEQPGSAFRRRLAGHLETGRPSRSDPAFGRV
Sequences:
>Translated_693_residues MTSSSSRRDFLKRVAALTAAGALPSSIGRALALPANARTGTLRDLEHVVILMQENRSFDHYFGALRGVRGFGDPRALQLR DGHAVWSQPTPDGRRVLPFAFDSQNTCAPLIKSLDHSWKAGHGQDPARWAEYDAWVPYKGELTMGYFQRHDIPYYHALAD AFTICDGYYCSLHGPTNPNRMYLFTGTSGPSVGNVGAQAVTNADDGNWTADMARDKPGYAALQWTTYAQRLQAAGVDWRV YQEYDNFGCNSLAYFSHYRDLRTDDERYLRARACVPGSTAGNAATTQAEHLVAAIAADVRANRLPQVSWVIPPTAYCEHP EAPPAYGESLVARLIDALTANPEVWAKTALIINYDENDGFFDHVPAPLPALDARMGRSNVDTHGEVYDGVPIGLGIRVPM LVISPWTRGGWVNSQVFDHTSVLRLLERRFGVAEPNISPWRRAVSGDLTSVFDFRKPDDSALSALPSVDDYRARTAAVRD KPLPSAPAAATMPRQEPGQRPARALPYALQVHARVQEGAAVQLQFVNSGAAAAAFNVYNSAAGGGPWYYTVLPGTQLDDA PIGATHEGAYALRVHGPNGFLREFAGQVPRASAPSAAPWVEARQEGDALVLEIGNAGQRACTVQLRALDYADPSARTLSL AAGQRETIRLALAASDHWYDLVVEQPGSAFRRRLAGHLETGRPSRSDPAFGRV >Mature_692_residues TSSSSRRDFLKRVAALTAAGALPSSIGRALALPANARTGTLRDLEHVVILMQENRSFDHYFGALRGVRGFGDPRALQLRD GHAVWSQPTPDGRRVLPFAFDSQNTCAPLIKSLDHSWKAGHGQDPARWAEYDAWVPYKGELTMGYFQRHDIPYYHALADA FTICDGYYCSLHGPTNPNRMYLFTGTSGPSVGNVGAQAVTNADDGNWTADMARDKPGYAALQWTTYAQRLQAAGVDWRVY QEYDNFGCNSLAYFSHYRDLRTDDERYLRARACVPGSTAGNAATTQAEHLVAAIAADVRANRLPQVSWVIPPTAYCEHPE APPAYGESLVARLIDALTANPEVWAKTALIINYDENDGFFDHVPAPLPALDARMGRSNVDTHGEVYDGVPIGLGIRVPML VISPWTRGGWVNSQVFDHTSVLRLLERRFGVAEPNISPWRRAVSGDLTSVFDFRKPDDSALSALPSVDDYRARTAAVRDK PLPSAPAAATMPRQEPGQRPARALPYALQVHARVQEGAAVQLQFVNSGAAAAAFNVYNSAAGGGPWYYTVLPGTQLDDAP IGATHEGAYALRVHGPNGFLREFAGQVPRASAPSAAPWVEARQEGDALVLEIGNAGQRACTVQLRALDYADPSARTLSLA AGQRETIRLALAASDHWYDLVVEQPGSAFRRRLAGHLETGRPSRSDPAFGRV
Specific function: Hydrolyzes phosphatidylserine as well as phosphatidylcholine [H]
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR008475 - InterPro: IPR017767 - InterPro: IPR006311 [H]
Pfam domain/function: PF05506 DUF756; PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 75458; Mature: 75327
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSSSRRDFLKRVAALTAAGALPSSIGRALALPANARTGTLRDLEHVVILMQENRSFDH CCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEECCCCCCCCCHHCCEEEEEEEECCCCHHH YFGALRGVRGFGDPRALQLRDGHAVWSQPTPDGRRVLPFAFDSQNTCAPLIKSLDHSWKA HHHHHHHCCCCCCCCEEEEECCCEECCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCC GHGQDPARWAEYDAWVPYKGELTMGYFQRHDIPYYHALADAFTICDGYYCSLHGPTNPNR CCCCCCHHHHCCCCCCCCCCCEEEHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCE MYLFTGTSGPSVGNVGAQAVTNADDGNWTADMARDKPGYAALQWTTYAQRLQAAGVDWRV EEEEECCCCCCCCCCCCHHCCCCCCCCEEHHHCCCCCCCEEEEHHHHHHHHHHCCCCEEE YQEYDNFGCNSLAYFSHYRDLRTDDERYLRARACVPGSTAGNAATTQAEHLVAAIAADVR EEHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH ANRLPQVSWVIPPTAYCEHPEAPPAYGESLVARLIDALTANPEVWAKTALIINYDENDGF HCCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC FDHVPAPLPALDARMGRSNVDTHGEVYDGVPIGLGIRVPMLVISPWTRGGWVNSQVFDHT CCCCCCCCCHHHHHCCCCCCCCCCCEECCEEECCCCCCCEEEEECCCCCCCCCCHHHHHH SVLRLLERRFGVAEPNISPWRRAVSGDLTSVFDFRKPDDSALSALPSVDDYRARTAAVRD HHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHCC KPLPSAPAAATMPRQEPGQRPARALPYALQVHARVQEGAAVQLQFVNSGAAAAAFNVYNS CCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEEEECCCCCEEEEEEECCCCCCEEHHHHHC AAGGGPWYYTVLPGTQLDDAPIGATHEGAYALRVHGPNGFLREFAGQVPRASAPSAAPWV CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCHH EARQEGDALVLEIGNAGQRACTVQLRALDYADPSARTLSLAAGQRETIRLALAASDHWYD HHHCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEECCCCEEEEEEEEECCCEEE LVVEQPGSAFRRRLAGHLETGRPSRSDPAFGRV EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TSSSSRRDFLKRVAALTAAGALPSSIGRALALPANARTGTLRDLEHVVILMQENRSFDH CCCCHHHHHHHHHHHHHHHCCCHHHHCCEEECCCCCCCCCHHCCEEEEEEEECCCCHHH YFGALRGVRGFGDPRALQLRDGHAVWSQPTPDGRRVLPFAFDSQNTCAPLIKSLDHSWKA HHHHHHHCCCCCCCCEEEEECCCEECCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCC GHGQDPARWAEYDAWVPYKGELTMGYFQRHDIPYYHALADAFTICDGYYCSLHGPTNPNR CCCCCCHHHHCCCCCCCCCCCEEEHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCE MYLFTGTSGPSVGNVGAQAVTNADDGNWTADMARDKPGYAALQWTTYAQRLQAAGVDWRV EEEEECCCCCCCCCCCCHHCCCCCCCCEEHHHCCCCCCCEEEEHHHHHHHHHHCCCCEEE YQEYDNFGCNSLAYFSHYRDLRTDDERYLRARACVPGSTAGNAATTQAEHLVAAIAADVR EEHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH ANRLPQVSWVIPPTAYCEHPEAPPAYGESLVARLIDALTANPEVWAKTALIINYDENDGF HCCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC FDHVPAPLPALDARMGRSNVDTHGEVYDGVPIGLGIRVPMLVISPWTRGGWVNSQVFDHT CCCCCCCCCHHHHHCCCCCCCCCCCEECCEEECCCCCCCEEEEECCCCCCCCCCHHHHHH SVLRLLERRFGVAEPNISPWRRAVSGDLTSVFDFRKPDDSALSALPSVDDYRARTAAVRD HHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHCC KPLPSAPAAATMPRQEPGQRPARALPYALQVHARVQEGAAVQLQFVNSGAAAAAFNVYNS CCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEEEECCCCCEEEEEEECCCCCCEEHHHHHC AAGGGPWYYTVLPGTQLDDAPIGATHEGAYALRVHGPNGFLREFAGQVPRASAPSAAPWV CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCHH EARQEGDALVLEIGNAGQRACTVQLRALDYADPSARTLSLAAGQRETIRLALAASDHWYD HHHCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEECCCCEEEEEEEEECCCEEE LVVEQPGSAFRRRLAGHLETGRPSRSDPAFGRV EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2120196; 10984043 [H]