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The map label for this gene is ybaK [H]

Identifier: 21241701

GI number: 21241701

Start: 1095668

End: 1096141

Strand: Reverse

Name: ybaK [H]

Synonym: XAC0931

Alternate gene names: 21241701

Gene position: 1096141-1095668 (Counterclockwise)

Preceding gene: 21241702

Following gene: 21241695

Centisome position: 21.18

GC content: 66.46

Gene sequence:

>474_bases
ATGAGCAAGGCCACACGCGCCACCAAGGCCCTGGACGCGGCCGGCGTAGGTTATGTGTTGCATCCTTACGACTACCGGGC
CGATGCCGATGCGAAGGGACTGCAAGCCGCAGATGCGTTGGGCCTGCAGCCGCATACCGTGTTGAAGACGCTGATGGCAT
GGGTCGACGACAAGGCGGTGTGCGTGGTGATTCCATGCGACCGCCGGGTGTCGTTGAAGAAACTGGCCAGCGCCTACGGC
GGCAAGTCGGCACGCATGATGGACGTGGCCGATGCCGAGCGGCGCACCGGTTACAAGGTCGGCGGTATCAGCCCGCTCGG
CCAGCAACGGCAGGCGCCGGTGCTGGTCGAAGTCACGGCGTTGGACGTACCGGCGCTGTGGATCAACGCCGGCCAGCGGG
GGCTGCTGCTGGAATTGCCCGGCACCCAGCTGGTGCATGCACTCGCCGCACGCGCTTGCGCGCTGTGCGAGTGA

Upstream 100 bases:

>100_bases
CTGCCGGCAGGCGTTTATATCGCCATGAACGGCCGCATCTGGAATCCGCAAAAGGTGCGCAAGAACGTGGCTGCCAACCG
CTTCGAATCGGTCTGAGCGC

Downstream 100 bases:

>100_bases
ACGCGTAAACGCGATGCCGCGCGTATCGGCCGGTATGCGCGCTACGCGTTTGGGACTCGACTCACGCGATGCTCTCGGCG
GATCGCCTGCATTGATTTCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSKATRATKALDAAGVGYVLHPYDYRADADAKGLQAADALGLQPHTVLKTLMAWVDDKAVCVVIPCDRRVSLKKLASAYG
GKSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEVTALDVPALWINAGQRGLLLELPGTQLVHALAARACALCE

Sequences:

>Translated_157_residues
MSKATRATKALDAAGVGYVLHPYDYRADADAKGLQAADALGLQPHTVLKTLMAWVDDKAVCVVIPCDRRVSLKKLASAYG
GKSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEVTALDVPALWINAGQRGLLLELPGTQLVHALAARACALCE
>Mature_156_residues
SKATRATKALDAAGVGYVLHPYDYRADADAKGLQAADALGLQPHTVLKTLMAWVDDKAVCVVIPCDRRVSLKKLASAYGG
KSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEVTALDVPALWINAGQRGLLLELPGTQLVHALAARACALCE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=150, Percent_Identity=36.6666666666667, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16638; Mature: 16506

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKATRATKALDAAGVGYVLHPYDYRADADAKGLQAADALGLQPHTVLKTLMAWVDDKAV
CCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCE
CVVIPCDRRVSLKKLASAYGGKSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEVTA
EEEECCCCCCHHHHHHHHHCCCCCEEEECCCHHHHCCEECCCCCCCCCCCCCCEEEEEEE
LDVPALWINAGQRGLLLELPGTQLVHALAARACALCE
CCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKATRATKALDAAGVGYVLHPYDYRADADAKGLQAADALGLQPHTVLKTLMAWVDDKAV
CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCE
CVVIPCDRRVSLKKLASAYGGKSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEVTA
EEEECCCCCCHHHHHHHHHCCCCCEEEECCCHHHHCCEECCCCCCCCCCCCCCEEEEEEE
LDVPALWINAGQRGLLLELPGTQLVHALAARACALCE
CCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]