| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yjjK [H]
Identifier: 21241512
GI number: 21241512
Start: 881112
End: 882773
Strand: Reverse
Name: yjjK [H]
Synonym: XAC0741
Alternate gene names: 21241512
Gene position: 882773-881112 (Counterclockwise)
Preceding gene: 21241518
Following gene: 21241511
Centisome position: 17.06
GC content: 63.18
Gene sequence:
>1662_bases ATGTCGCAATACATCTACACCATGAACCGCGTCAGCAAGGTGGTCCCGCCCAAGCGGCAGATCATCAAGGACATCTCGCT GAGCTTCTTCCCGGGCGCCAAGATCGGCCTGCTGGGCCTGAACGGCGCGGGCAAGTCCACGGTACTGAAGATCATGGCCG GGGTGGACACCGATTTCGAAGGCGAGGCACGCCCGCAACCGGGCATCAAGGTCGGCTACCTGGCGCAGGAACCGCAGCTC AATCCCGAGCACACCGTGCGCGAGGCGGTGGAAGAGGGCGTGGGCGACGTGCTGCAGGCCCAGGCCGCGCTGGACGCGGT GTATCTGGCCTATGCCGAAGAAGGCGCCGATTTCGACGCGCTGGCCAAGGAACAGGAACGCCTGGAAGCGATCCTGGCCG CCGGCGATGCGCACACCCTGGAAAACCAGCTGGATGTGGCCGCCGATGCGCTGCGCCTGCCGCCGTGGGACGCCATCGTC GGCAAGCTCTCCGGTGGCGAAAAGCGTCGCGTGGCGCTGTGCCGCCTACTGTTGCAAAAGCCGGACATGCTGCTGCTCGA CGAACCCACCAACCACCTGGACGCCGAGTCGGTGGAATGGCTGGAGCAGTTCCTGGCGCGCTACACCGGCACCGTGGTGG CGGTGACGCATGATCGCTACTTCCTCGACAACGCCGCCGAGTGGATCCTGGAACTGGACCGCGGCCGCGGCATTCCGTGG AAGGGCAACTACACCGACTGGCTGACCCAGAAGGACGAGCGCCTCAAGCAGGAAGACAACCAGGAGAAGTCCCGCCAGAA GGCGATCCAGAAGGAACTGGAATGGTCGCGCCAGAACGCCAAGGGCGGCCGCACCAAGGGCAAGGCACGTCTGGCCCGCC TGGAAGAGCTGCAATCGGTCGATTACCAGAAGCGCAACGAAACCAACGAGATCTTCATCCCGCCGGGCGAACGCCTGGGC AACGCGGTGATGGAGTTCAAGAACGTGTCCAAGAAGTTCGGCGACCGCCTGTTGATCGACAACCTGTCGATGATCGTGCC GCCGGGCGCCATCGTCGGCATCATCGGCCCCAACGGTGCCGGTAAGTCGACCCTGTTCAAGATGATTACCGGCCAGGAAA AGCCGGACTCCGGCGAGATCGTGGTCGGACCGACCGTGCAGCTGTCGTACGTGGACCAGAGCCGCGACGCGCTGGAAGGC AACCACAATGTGTTCCAGGAAATCGCTGGGGGCCTGGACATCCTCAACATCAACGGCATCGAGATCCAGTCGCGCGCCTA CATCGGCCGCTTCAACTTCAAGGGCCAGGACCAGCAGAAGATGGTCGGTTCGCTGTCCGGTGGTGAGCGTGGTCGTCTGC ACATGGCCAAGACCCTGCTGCAGGGCGGCAACGTACTGCTGCTCGACGAACCGTCAAACGACCTGGACATCGAAACCCTG CGTGCGCTGGAAGATGCGTTGCTGGAATTCCCTGGCAATACCTTCGTGATTTCGCATGACCGCTGGTTCCTGGACCGCAT CGCCACGCACATCCTGGCCTTCGAAGGCGATTCGCACGTGGAGTTCTTCCAGGGCAACTATCGCGAGTACGAAGAAGACA AGCGCCGCCGCATGGGCGACGACGCAGGCCCCAAGCGCCTGCGCTTCAAGGCGTTGAAGTAA
Upstream 100 bases:
>100_bases CGCTGCCGCGACCCAAGCCACTTGCCCGTATAATTGGCGCAATCCCTTTTCCGCTGCCTCCGGCCTCGGCCGGCGGGCTG CCTGCGTCCACGGAGCCCCC
Downstream 100 bases:
>100_bases GTCGTCGTCGGAGTAGAAAAAAGGCGCCGAAAGGCGCCTTTTTTATCTGCGATGTCATCGGACGGATGCTTGGCTGTTGG CTGCTATCGCCGTCCACCTG
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 553; Mature: 552
Protein sequence:
>553_residues MSQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFEGEARPQPGIKVGYLAQEPQL NPEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDALAKEQERLEAILAAGDAHTLENQLDVAADALRLPPWDAIV GKLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPW KGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSVDYQKRNETNEIFIPPGERLG NAVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGAGKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEG NHNVFQEIAGGLDILNINGIEIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETL RALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGDDAGPKRLRFKALK
Sequences:
>Translated_553_residues MSQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFEGEARPQPGIKVGYLAQEPQL NPEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDALAKEQERLEAILAAGDAHTLENQLDVAADALRLPPWDAIV GKLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPW KGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSVDYQKRNETNEIFIPPGERLG NAVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGAGKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEG NHNVFQEIAGGLDILNINGIEIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETL RALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGDDAGPKRLRFKALK >Mature_552_residues SQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFEGEARPQPGIKVGYLAQEPQLN PEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDALAKEQERLEAILAAGDAHTLENQLDVAADALRLPPWDAIVG KLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPWK GNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSVDYQKRNETNEIFIPPGERLGN AVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGAGKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEGN HNVFQEIAGGLDILNINGIEIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETLR ALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGDDAGPKRLRFKALK
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=540, Percent_Identity=29.4444444444444, Blast_Score=189, Evalue=7e-48, Organism=Homo sapiens, GI10947137, Length=550, Percent_Identity=29.4545454545455, Blast_Score=179, Evalue=8e-45, Organism=Homo sapiens, GI27881506, Length=550, Percent_Identity=29.4545454545455, Blast_Score=178, Evalue=1e-44, Organism=Homo sapiens, GI10947135, Length=550, Percent_Identity=26.9090909090909, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI69354671, Length=550, Percent_Identity=26.9090909090909, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI27477115, Length=161, Percent_Identity=34.7826086956522, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI47078218, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI45446740, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=69.620253164557, Blast_Score=804, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=520, Percent_Identity=34.6153846153846, Blast_Score=276, Evalue=2e-75, Organism=Escherichia coli, GI1789751, Length=521, Percent_Identity=33.0134357005758, Blast_Score=249, Evalue=2e-67, Organism=Escherichia coli, GI1787041, Length=528, Percent_Identity=29.5454545454545, Blast_Score=222, Evalue=5e-59, Organism=Escherichia coli, GI87081782, Length=578, Percent_Identity=24.5674740484429, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=29.1666666666667, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI48994943, Length=477, Percent_Identity=25.3668763102725, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1786975, Length=386, Percent_Identity=25.9067357512953, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=30.3317535545024, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=29.6803652968037, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI87081791, Length=194, Percent_Identity=32.4742268041237, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788761, Length=197, Percent_Identity=28.4263959390863, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1787712, Length=195, Percent_Identity=29.2307692307692, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=28.3653846153846, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1788225, Length=211, Percent_Identity=26.5402843601896, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1790467, Length=222, Percent_Identity=29.2792792792793, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787164, Length=184, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=31.7991631799163, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=30.5418719211823, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1788897, Length=207, Percent_Identity=25.1207729468599, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790525, Length=216, Percent_Identity=24.537037037037, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788450, Length=221, Percent_Identity=29.8642533936652, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787370, Length=193, Percent_Identity=27.979274611399, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1786253, Length=181, Percent_Identity=31.4917127071823, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1786563, Length=190, Percent_Identity=25.7894736842105, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17559834, Length=539, Percent_Identity=27.0871985157699, Blast_Score=179, Evalue=4e-45, Organism=Caenorhabditis elegans, GI17553372, Length=527, Percent_Identity=30.7400379506641, Blast_Score=176, Evalue=2e-44, Organism=Caenorhabditis elegans, GI17555318, Length=553, Percent_Identity=27.3056057866184, Blast_Score=168, Evalue=6e-42, Organism=Caenorhabditis elegans, GI17541710, Length=256, Percent_Identity=29.296875, Blast_Score=73, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193208177, Length=252, Percent_Identity=28.1746031746032, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=279, Percent_Identity=27.5985663082437, Blast_Score=70, Evalue=4e-12, Organism=Caenorhabditis elegans, GI212646699, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=514, Percent_Identity=31.5175097276265, Blast_Score=201, Evalue=3e-52, Organism=Saccharomyces cerevisiae, GI6321121, Length=547, Percent_Identity=26.8738574040219, Blast_Score=180, Evalue=7e-46, Organism=Saccharomyces cerevisiae, GI6325030, Length=384, Percent_Identity=27.8645833333333, Blast_Score=114, Evalue=4e-26, Organism=Saccharomyces cerevisiae, GI6323278, Length=237, Percent_Identity=29.1139240506329, Blast_Score=108, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6324314, Length=365, Percent_Identity=25.7534246575342, Blast_Score=106, Evalue=8e-24, Organism=Saccharomyces cerevisiae, GI6320266, Length=382, Percent_Identity=25.9162303664921, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI24666836, Length=546, Percent_Identity=29.3040293040293, Blast_Score=184, Evalue=1e-46, Organism=Drosophila melanogaster, GI24642252, Length=549, Percent_Identity=27.3224043715847, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI18859989, Length=549, Percent_Identity=27.3224043715847, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24641342, Length=532, Percent_Identity=28.5714285714286, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24648279, Length=155, Percent_Identity=32.258064516129, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI161078426, Length=155, Percent_Identity=32.258064516129, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357907, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI281362751, Length=162, Percent_Identity=30.2469135802469, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI85725262, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24666092, Length=182, Percent_Identity=29.1208791208791, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24650853, Length=162, Percent_Identity=30.2469135802469, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24643674, Length=186, Percent_Identity=28.494623655914, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650855, Length=162, Percent_Identity=30.2469135802469, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574259, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 61734; Mature: 61603
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFE CCCEEEHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC GEARPQPGIKVGYLAQEPQLNPEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDA CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LAKEQERLEAILAAGDAHTLENQLDVAADALRLPPWDAIVGKLSGGEKRRVALCRLLLQK HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCC PDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPW CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCC KGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSV CCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC DYQKRNETNEIFIPPGERLGNAVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGA CHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCEEECCCEEEEEECCCCC GKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEGNHNVFQEIAGGLDILNINGI CHHHHHHHHCCCCCCCCCCEEECCEEEEEECCCCHHHHCCCHHHHHHHHCCCEEEECCCE EIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETL EEECCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHH RALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGD HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHHCCC DAGPKRLRFKALK CCCCCCCEEEECC >Mature Secondary Structure SQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFE CCEEEHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC GEARPQPGIKVGYLAQEPQLNPEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDA CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LAKEQERLEAILAAGDAHTLENQLDVAADALRLPPWDAIVGKLSGGEKRRVALCRLLLQK HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCC PDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPW CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCC KGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSV CCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC DYQKRNETNEIFIPPGERLGNAVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGA CHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCEEECCCEEEEEECCCCC GKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEGNHNVFQEIAGGLDILNINGI CHHHHHHHHCCCCCCCCCCEEECCEEEEEECCCCHHHHCCCHHHHHHHHCCCEEEECCCE EIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETL EEECCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHH RALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGD HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHHCCC DAGPKRLRFKALK CCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]