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The map label for this gene is pafC [H]

Identifier: 21241396

GI number: 21241396

Start: 739348

End: 740313

Strand: Direct

Name: pafC [H]

Synonym: XAC0625

Alternate gene names: 21241396

Gene position: 739348-740313 (Clockwise)

Preceding gene: 21241395

Following gene: 21241398

Centisome position: 14.29

GC content: 64.29

Gene sequence:

>966_bases
ATGGACCGCTACGAACGCATCAACTCCCTGCATCGCTTGCTCAAATCGGCACGCTACCCGGTCACGGTGGCGCGGCTGCA
GGATGAGCTGAGCTGTTCCCGTGCAACTGTCTACCGCGATCTGGCGTTTCTGCGCGATGCGCTGATGGCGCCGGTGGAAG
GAGATGGCGAATCGGGCTTTCGCTATCTCTCCGGCGAAAGCGACCGCTTCGAATTGCCCGGCCTGTGGCTGAGTTCGGAA
GAACTGCACGCGCTGCTGGCCTCGCAACAGCTGCTCGCGCGCACCGGCGGCGGGGTGTTGTCCTCGATGCTGGCACCGCT
GCAGCAGCGCATCGAAGGACTGCTGGCTGCCCAGGCCGGCGTCTCGCAATGGCCGGTGGATCGGGTGCGGGTCATTCCAC
ACCGTGGCCGCAAGCTGGACGAAGCCAGCTTCCGCACCGTGGCCTCCGGCGTGCTGGAGCGCAAGCAGCTGAGCTTCGAT
TACCGTGCGCGTTCGACCGACGAATCGACCAAGCGGACGGTGTCGCCACAGCGCATCACCCATTACCGCGACAACTGGTA
TCTGGACGCGTGGGATCACGGGCGCGACGGCGTGCGCAGCTTTGCGGTGGACCGCATCAACCACGCGCGTCTGCTCGATG
CGGCGCCGCGCGATGTGCCCGACAGCGAATTGGACGAGCAGCTTGCCGCCAGCTACGGCATTTTTTCCGGGGCGCCCAAG
GGGTGGGCGACCATCGTGTTCAGCTCCAAGGCCGCGCGTTGGGTTGCCGACGAACATTGGCATTCCAAGCAGCAGGGCCG
CTTTCTGCCCGATGGCCGTTACGAGCTCAAGTTGCCGTACAGCAACTCGCGCGAATTGCTGATGGACGTGCTGCACTACG
GCTCGGACGCAGAGATCGTCGAGCCCATGTCGCTGCGCGAGCAGGCCAAGGCATTGTTGTCGCTGGCATTGAGCAATTAC
GACTGA

Upstream 100 bases:

>100_bases
AGCCGCTGCGTCGCTCGTCCCCTGGGCGCTTGCCGCCGTCTGCCCGCCGTCACATCGCGATGCTCACCCCGCCGCGCAAA
GACTCGGACATAATCGACGC

Downstream 100 bases:

>100_bases
GTCTGGCCGGCGGTGAATGGCTGCGCCGCGTGGCTGCTGCGGCGCGCATCTGCATGACGGTCGACGAGGCGCTGCCGACC
CGGCGCATGGCCAGTGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGFRYLSGESDRFELPGLWLSSE
ELHALLASQQLLARTGGGVLSSMLAPLQQRIEGLLAAQAGVSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFD
YRARSTDESTKRTVSPQRITHYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAASYGIFSGAPK
GWATIVFSSKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIVEPMSLREQAKALLSLALSNY
D

Sequences:

>Translated_321_residues
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGFRYLSGESDRFELPGLWLSSE
ELHALLASQQLLARTGGGVLSSMLAPLQQRIEGLLAAQAGVSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFD
YRARSTDESTKRTVSPQRITHYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAASYGIFSGAPK
GWATIVFSSKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIVEPMSLREQAKALLSLALSNY
D
>Mature_321_residues
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGFRYLSGESDRFELPGLWLSSE
ELHALLASQQLLARTGGGVLSSMLAPLQQRIEGLLAAQAGVSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFD
YRARSTDESTKRTVSPQRITHYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAASYGIFSGAPK
GWATIVFSSKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIVEPMSLREQAKALLSLALSNY
D

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36289; Mature: 36289

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGF
CCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RYLSGESDRFELPGLWLSSEELHALLASQQLLARTGGGVLSSMLAPLQQRIEGLLAAQAG
EEECCCCCCEECCCCEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
VSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFDYRARSTDESTKRTVSPQRIT
CCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHCCCHHHHH
HYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAASYGIFSGAPK
HHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
GWATIVFSSKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIV
CCEEEEECCCCHHHHHHHHHCCHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCHH
EPMSLREQAKALLSLALSNYD
CHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRYERINSLHRLLKSARYPVTVARLQDELSCSRATVYRDLAFLRDALMAPVEGDGESGF
CCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RYLSGESDRFELPGLWLSSEELHALLASQQLLARTGGGVLSSMLAPLQQRIEGLLAAQAG
EEECCCCCCEECCCCEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
VSQWPVDRVRVIPHRGRKLDEASFRTVASGVLERKQLSFDYRARSTDESTKRTVSPQRIT
CCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHCCCHHHHH
HYRDNWYLDAWDHGRDGVRSFAVDRINHARLLDAAPRDVPDSELDEQLAASYGIFSGAPK
HHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
GWATIVFSSKAARWVADEHWHSKQQGRFLPDGRYELKLPYSNSRELLMDVLHYGSDAEIV
CCEEEEECCCCHHHHHHHHHCCHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCHH
EPMSLREQAKALLSLALSNYD
CHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]