| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is ydfG [C]
Identifier: 21241351
GI number: 21241351
Start: 682814
End: 683548
Strand: Reverse
Name: ydfG [C]
Synonym: XAC0580
Alternate gene names: 21241351
Gene position: 683548-682814 (Counterclockwise)
Preceding gene: 21241354
Following gene: 21241350
Centisome position: 13.21
GC content: 64.49
Gene sequence:
>735_bases ATGACGATCGAAAACAAGGTCGTGGTCATCATCGGCGCCGGCAGCGGCACGGGCCGGGCCACCGCGCTTCACCTGGGCGC ACTCGGCGCCAAGGTGGTCCTTGGTGCACGCCGCGAGGCACGCATTGCCGAGGTCGCCATGGAAATCGTCCAATCCGGCG GGCAGGCGGTCTACCGGCCAACCGACGTCACCGTGCACAAGCAGGTCCTGGCCCTGGTGGACTTGGCCTGCTCGCAATTC GGGCGGCTCGACGTCATGGTCAACAATGCCGGCATCAGTCCACTGTCCCGATTCGATGCCCTGCAGGTCGACGCATGGAA CGCGATGATCGATGTCAATCTGCGTGGCGTACTCCACGGAATTGCGGCCGCGCTGCCGGTCTTCGACCGCCAGCAAAGCG GCCATGTCATCAACGTGGTCTCCACAGCCGGATTGCGCATCGTGCCGACGATGGGTGTCTATGCTGCGACCAAGAACGCG GTCAGAACCATCAGCGAGGCGCTGCGCCAGGAATCCGGGCCGCACATCCGCGTCACCGAGCTCTCACCCGGCATGGTGCA ATCGGAGTTGCTGCACACCGTGAGCGACCCAACGCTGCGGCAAACCCTGCAAGCGCAGTCCGAGGCAAGCGGCATTCCCG CAGAGGCCATCGCGCACGCCATCGCCTATGCGATCGATCAGCCAGATGATGTCGAGGTCGGCAGCCTGGTCATCCGCCCT ACATCGCAAGCGTAG
Upstream 100 bases:
>100_bases GTCATCCTTGGACGATTGCGATGAAACCATGGCCGCGCAAGCATAATTCATCCAACCGGCAGCGCTACCGTGGGTGGCAC GTCCATCACGGAGCACGCAG
Downstream 100 bases:
>100_bases TAGCAATCAAAATACTTGCGCACTGGCGTTCCATTGTTTCTCCAAGATCTTTGAAGTGGACAAGACTCCGTCGTTCTGAT ACGCCCAGGATTTCCTAGAC
Product: oxidoreductase
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MTIENKVVVIIGAGSGTGRATALHLGALGAKVVLGARREARIAEVAMEIVQSGGQAVYRPTDVTVHKQVLALVDLACSQF GRLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHGIAAALPVFDRQQSGHVINVVSTAGLRIVPTMGVYAATKNA VRTISEALRQESGPHIRVTELSPGMVQSELLHTVSDPTLRQTLQAQSEASGIPAEAIAHAIAYAIDQPDDVEVGSLVIRP TSQA
Sequences:
>Translated_244_residues MTIENKVVVIIGAGSGTGRATALHLGALGAKVVLGARREARIAEVAMEIVQSGGQAVYRPTDVTVHKQVLALVDLACSQF GRLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHGIAAALPVFDRQQSGHVINVVSTAGLRIVPTMGVYAATKNA VRTISEALRQESGPHIRVTELSPGMVQSELLHTVSDPTLRQTLQAQSEASGIPAEAIAHAIAYAIDQPDDVEVGSLVIRP TSQA >Mature_243_residues TIENKVVVIIGAGSGTGRATALHLGALGAKVVLGARREARIAEVAMEIVQSGGQAVYRPTDVTVHKQVLALVDLACSQFG RLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHGIAAALPVFDRQQSGHVINVVSTAGLRIVPTMGVYAATKNAV RTISEALRQESGPHIRVTELSPGMVQSELLHTVSDPTLRQTLQAQSEASGIPAEAIAHAIAYAIDQPDDVEVGSLVIRPT SQA
Specific function: Unknown
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=29.8804780876494, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=32.8358208955224, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=31.0880829015544, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI59889578, Length=209, Percent_Identity=33.4928229665072, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=229, Percent_Identity=28.82096069869, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=30.2439024390244, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4503817, Length=173, Percent_Identity=27.1676300578035, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=29.3650793650794, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=28.2786885245902, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI40807363, Length=229, Percent_Identity=26.6375545851528, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4504505, Length=216, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI142976729, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254992, Length=225, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI19923817, Length=200, Percent_Identity=24.5, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI32483357, Length=214, Percent_Identity=25.7009345794392, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI224922801, Length=166, Percent_Identity=30.7228915662651, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI40254986, Length=241, Percent_Identity=27.3858921161826, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787820, Length=244, Percent_Identity=27.8688524590164, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI87082160, Length=204, Percent_Identity=28.4313725490196, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787335, Length=230, Percent_Identity=29.5652173913043, Blast_Score=80, Evalue=8e-17, Organism=Escherichia coli, GI1790717, Length=236, Percent_Identity=30.5084745762712, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1787905, Length=207, Percent_Identity=28.0193236714976, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87082100, Length=236, Percent_Identity=27.9661016949153, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1786812, Length=227, Percent_Identity=29.5154185022026, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1789208, Length=197, Percent_Identity=28.4263959390863, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=26.6393442622951, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1787526, Length=189, Percent_Identity=25.3968253968254, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=29.7959183673469, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17568967, Length=215, Percent_Identity=31.6279069767442, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17560676, Length=235, Percent_Identity=25.9574468085106, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17559104, Length=190, Percent_Identity=32.1052631578947, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71997402, Length=245, Percent_Identity=25.3061224489796, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17562910, Length=243, Percent_Identity=28.3950617283951, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193203117, Length=175, Percent_Identity=29.1428571428571, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17562904, Length=204, Percent_Identity=28.921568627451, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193203115, Length=213, Percent_Identity=26.7605633802817, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17544670, Length=245, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17564282, Length=222, Percent_Identity=25.2252252252252, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17567345, Length=200, Percent_Identity=28.5, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17562906, Length=193, Percent_Identity=33.160621761658, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17551412, Length=251, Percent_Identity=27.8884462151394, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562908, Length=233, Percent_Identity=27.8969957081545, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=29.7979797979798, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17561402, Length=200, Percent_Identity=25, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193204405, Length=246, Percent_Identity=27.2357723577236, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115534694, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=28.2722513089005, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538480, Length=244, Percent_Identity=26.6393442622951, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17538182, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71982365, Length=141, Percent_Identity=29.7872340425532, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17570069, Length=175, Percent_Identity=26.8571428571429, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17538486, Length=196, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=29.6747967479675, Blast_Score=102, Evalue=7e-23, Organism=Saccharomyces cerevisiae, GI6322861, Length=213, Percent_Identity=30.5164319248826, Blast_Score=87, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6322226, Length=188, Percent_Identity=26.5957446808511, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI28571526, Length=233, Percent_Identity=29.1845493562232, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI24663911, Length=255, Percent_Identity=31.3725490196078, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24641388, Length=252, Percent_Identity=30.952380952381, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24648693, Length=254, Percent_Identity=30.3149606299213, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI21355889, Length=254, Percent_Identity=30.3149606299213, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI116007236, Length=251, Percent_Identity=30.2788844621514, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24641232, Length=252, Percent_Identity=30.5555555555556, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=30.8300395256917, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24648944, Length=249, Percent_Identity=28.9156626506024, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=28.7958115183246, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=34.5549738219895, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI281364892, Length=196, Percent_Identity=33.1632653061224, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24644339, Length=234, Percent_Identity=27.3504273504274, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI28571387, Length=247, Percent_Identity=29.1497975708502, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI17737361, Length=243, Percent_Identity=30.0411522633745, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI21355631, Length=226, Percent_Identity=26.1061946902655, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640492, Length=217, Percent_Identity=28.110599078341, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21355319, Length=194, Percent_Identity=28.3505154639175, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI18859837, Length=154, Percent_Identity=33.1168831168831, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=30.0492610837438, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643142, Length=204, Percent_Identity=31.8627450980392, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24651139, Length=199, Percent_Identity=29.6482412060301, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007238, Length=176, Percent_Identity=30.6818181818182, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24640442, Length=190, Percent_Identity=32.1052631578947, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25661; Mature: 25530
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIENKVVVIIGAGSGTGRATALHLGALGAKVVLGARREARIAEVAMEIVQSGGQAVYRP CCCCCEEEEEEECCCCCCCEEEEEHHHHCHHHEECCCHHHHHHHHHHHHHHCCCCEEECC TDVTVHKQVLALVDLACSQFGRLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHG CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCEEEEECCCEEEEEEHHHHHHH IAAALPVFDRQQSGHVINVVSTAGLRIVPTMGVYAATKNAVRTISEALRQESGPHIRVTE HHHHHCCCCCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE LSPGMVQSELLHTVSDPTLRQTLQAQSEASGIPAEAIAHAIAYAIDQPDDVEVGSLVIRP CCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEE TSQA CCCC >Mature Secondary Structure TIENKVVVIIGAGSGTGRATALHLGALGAKVVLGARREARIAEVAMEIVQSGGQAVYRP CCCCEEEEEEECCCCCCCEEEEEHHHHCHHHEECCCHHHHHHHHHHHHHHCCCCEEECC TDVTVHKQVLALVDLACSQFGRLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHG CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCEEEEECCCEEEEEEHHHHHHH IAAALPVFDRQQSGHVINVVSTAGLRIVPTMGVYAATKNAVRTISEALRQESGPHIRVTE HHHHHCCCCCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE LSPGMVQSELLHTVSDPTLRQTLQAQSEASGIPAEAIAHAIAYAIDQPDDVEVGSLVIRP CCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEE TSQA CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1905979; 11679669 [H]