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The map label for this gene is hrcJ [H]

Identifier: 21241182

GI number: 21241182

Start: 479630

End: 480391

Strand: Direct

Name: hrcJ [H]

Synonym: XAC0409

Alternate gene names: 21241182

Gene position: 479630-480391 (Clockwise)

Preceding gene: 21241181

Following gene: 21241183

Centisome position: 9.27

GC content: 61.94

Gene sequence:

>762_bases
ATGCGCGCGCTGAGATACCTGGTGGTGCTGCTGGTGGCGCTGCTGCTGTCTGCGTGCAGTCAGCAGCTGTATTCCGGGCT
CACCGAAAACGATGCGAACGACATGCTCGAGGTGCTGCTGCATGCGGGCGTGGACGCGTCCAAAGTCACGCCAGACGACG
GCAAGACCTGGGCGATAAACGCACCGCACGATCAGGTGTCCTATTCGCTGGAGGTGCTACGCGCGCACGGGTTGCCGCAT
GAGCGGCACGCCAATCTCGGCGAGATGTTCAAGAAGGATGGCTTGATCTCGACACCCACCGAAGAACGCGTACGTTTCAT
CTATGGCGTGTCCCAGCAGCTGTCGCAGACCTTGTCGAATATCGATGGGGTCATTTCGGCCGATGTGGAAATCGTGCTGC
CCAACAACGACCCGCTTTCCACCTCGGTAAAGCCTTCCAGCGCTGCGGTGTTCATCAAGTTCCGCGTCGGTAGCGATTTG
ACCAGTCTGTTGCCCAACATCAAGACGTTGGTCATGCACAGCGTGGAGGGACTCACCTACGAGAACGTCAGCGTCACGCT
GGTGCCGGGCGGAGCGGAGAGCGATGCGCAGTTCACCGCATCGGCACCGCCGAGACCTTCACCGTGGCCGTGGTTGGCCG
GGTGTGCGTTGGCGTTGTGTCTGGCGGTTGCAGCGGCGCTGTATTGGTGGCCAAACCCGCAGGCGGGCCGTTGGGGCGGC
TGGCAGCGCCTGCGGGAGTTGACGAAAGGCAAAGCCGGGTGA

Upstream 100 bases:

>100_bases
ATGCACGAGCTGACCATGGTCGGCTTCAACCTCAATGTCAGCGTCGGCGTGGCGCAATCGGGAAAGAACGCCGTGCAGAC
ACTGGTCAAGAACCAATAGC

Downstream 100 bases:

>100_bases
GCGCGGGATGGACAACACGCGGATCGACAATGCGGCACGATGTGTTCAGCGCTGGACGGACGCGTTGGCGCACCTGGCCG
AATCGTTGGACGCCGCACGG

Product: HrcJ protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MRALRYLVVLLVALLLSACSQQLYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPH
ERHANLGEMFKKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLSTSVKPSSAAVFIKFRVGSDL
TSLLPNIKTLVMHSVEGLTYENVSVTLVPGGAESDAQFTASAPPRPSPWPWLAGCALALCLAVAAALYWWPNPQAGRWGG
WQRLRELTKGKAG

Sequences:

>Translated_253_residues
MRALRYLVVLLVALLLSACSQQLYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPH
ERHANLGEMFKKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLSTSVKPSSAAVFIKFRVGSDL
TSLLPNIKTLVMHSVEGLTYENVSVTLVPGGAESDAQFTASAPPRPSPWPWLAGCALALCLAVAAALYWWPNPQAGRWGG
WQRLRELTKGKAG
>Mature_253_residues
MRALRYLVVLLVALLLSACSQQLYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPH
ERHANLGEMFKKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLSTSVKPSSAAVFIKFRVGSDL
TSLLPNIKTLVMHSVEGLTYENVSVTLVPGGAESDAQFTASAPPRPSPWPWLAGCALALCLAVAAALYWWPNPQAGRWGG
WQRLRELTKGKAG

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 27383; Mature: 27383

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALRYLVVLLVALLLSACSQQLYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAIN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
APHDQVSYSLEVLRAHGLPHERHANLGEMFKKDGLISTPTEERVRFIYGVSQQLSQTLSN
CCHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IDGVISADVEIVLPNNDPLSTSVKPSSAAVFIKFRVGSDLTSLLPNIKTLVMHSVEGLTY
CCCEEECCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEE
ENVSVTLVPGGAESDAQFTASAPPRPSPWPWLAGCALALCLAVAAALYWWPNPQAGRWGG
CCEEEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
WQRLRELTKGKAG
HHHHHHHHCCCCC
>Mature Secondary Structure
MRALRYLVVLLVALLLSACSQQLYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAIN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
APHDQVSYSLEVLRAHGLPHERHANLGEMFKKDGLISTPTEERVRFIYGVSQQLSQTLSN
CCHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IDGVISADVEIVLPNNDPLSTSVKPSSAAVFIKFRVGSDLTSLLPNIKTLVMHSVEGLTY
CCCEEECCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEE
ENVSVTLVPGGAESDAQFTASAPPRPSPWPWLAGCALALCLAVAAALYWWPNPQAGRWGG
CCEEEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
WQRLRELTKGKAG
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]