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The map label for this gene is hrpD5

Identifier: 21241172

GI number: 21241172

Start: 471202

End: 472140

Strand: Reverse

Name: hrpD5

Synonym: XAC0399

Alternate gene names: NA

Gene position: 472140-471202 (Counterclockwise)

Preceding gene: 21241173

Following gene: 21241171

Centisome position: 9.12

GC content: 60.38

Gene sequence:

>939_bases
ATGACCATGCAGCTTCGCGTACTGACAGGAACCCATGCAGGCGCACGATTAGATTTGGCACAAGGTCGTTACACCCTGGG
GAGCGATCCCCAAACCGATATCCGAATAGACGATTGGCCTGGTTGCTCACTCATTATCGAGGTAGACCAAGATGGTCAGA
TCCGCTATAGCAGCGACACGGTGCCAGAAACGTCCTTTGTTGCGTTTCAGCCAGTTCGCTTCGGTCCCCTGGTGCTGTGT
ATTGGCGATGCTGGTGCCGATTGGCCAGACGATGTGGCGCTGCTGGAGCAGCTGCTTTCCCCAGCCCCCACGCCGGCGCC
GCGCACGTCCAGGCGCAAAGTCTTGCGTACTGCGGTGGGTGCCATGCTAGCGCTTTCTGCAGCAGCGTTGATCCCCTCGT
TGCAACCCGCATTTCTATCCAATGCCGCCACCGGGCAACGTCCAGAAAATGCTGTCAATCAGGCCAAAGCCTTGTTGAAA
CAGCTCGGTTTTCGCGAAGCGCACGCTGAACGCGTCGGCACGCGCGTGCTGATCGAGGGGCTGGTCCCCAGCAGCGCCGA
TGCTGCCCGCTTGCGCACGCAGGTGCATCGTTATGATCCAGGCGTTGCCGTCAATGTGGCCGTGGTGGACGAAGTACTGG
CGACGCTGCGCGACAGCCTGGCCGATCCCGCGCTCAGCGTCCGTTACAACGGCAATGGCGTTTTCTCGGTTTCCGGCAGC
AGCGACAATGCCGAACGTGCAAGCCGCCGCATTGCCGATGTGCGTAGCGACCTGGGCCCTGAAGTGCGTTCGTTACACGT
GGAGATCAGCCAGCAAGACCCGTCCGTGAAACCACCGGAGAACTACGACGCGGCATTGCTCGCCGACGGCCTGCATTATG
TCGAAACACCGGACGGTACCAAACACATGACATCCCTGCCGCAGCAGGCGGCGCAATGA

Upstream 100 bases:

>100_bases
CGGAAAAGCCGCGCAGGCAGGTCGATCGTACACACGCCGTCACACGTCTGAACACACTACTGATTGAGCTACCACAACAG
GCGGCTCAGGAGGTTCGCCC

Downstream 100 bases:

>100_bases
GAGTCCACTATGTTCGATGCCATGACCGATACGGTCACCCAAGATATGAGCAAGATTTTGCAGACCAAGGCGGCGGATCC
TTCTGGCGAGCGGCTGCGCA

Product: HrpD5 protein

Products: NA

Alternate protein names: HrpD5 Protein; HRPW Transmembrane Protein; Type III Secretion -Like Protein; Type III Secretion Apparatus Protein; Serine Protease

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTMQLRVLTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYSSDTVPETSFVAFQPVRFGPLVLC
IGDAGADWPDDVALLEQLLSPAPTPAPRTSRRKVLRTAVGAMLALSAAALIPSLQPAFLSNAATGQRPENAVNQAKALLK
QLGFREAHAERVGTRVLIEGLVPSSADAARLRTQVHRYDPGVAVNVAVVDEVLATLRDSLADPALSVRYNGNGVFSVSGS
SDNAERASRRIADVRSDLGPEVRSLHVEISQQDPSVKPPENYDAALLADGLHYVETPDGTKHMTSLPQQAAQ

Sequences:

>Translated_312_residues
MTMQLRVLTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYSSDTVPETSFVAFQPVRFGPLVLC
IGDAGADWPDDVALLEQLLSPAPTPAPRTSRRKVLRTAVGAMLALSAAALIPSLQPAFLSNAATGQRPENAVNQAKALLK
QLGFREAHAERVGTRVLIEGLVPSSADAARLRTQVHRYDPGVAVNVAVVDEVLATLRDSLADPALSVRYNGNGVFSVSGS
SDNAERASRRIADVRSDLGPEVRSLHVEISQQDPSVKPPENYDAALLADGLHYVETPDGTKHMTSLPQQAAQ
>Mature_311_residues
TMQLRVLTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYSSDTVPETSFVAFQPVRFGPLVLCI
GDAGADWPDDVALLEQLLSPAPTPAPRTSRRKVLRTAVGAMLALSAAALIPSLQPAFLSNAATGQRPENAVNQAKALLKQ
LGFREAHAERVGTRVLIEGLVPSSADAARLRTQVHRYDPGVAVNVAVVDEVLATLRDSLADPALSVRYNGNGVFSVSGSS
DNAERASRRIADVRSDLGPEVRSLHVEISQQDPSVKPPENYDAALLADGLHYVETPDGTKHMTSLPQQAAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33398; Mature: 33267

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMQLRVLTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYSSDT
CCEEEEEEECCCCCCEEECCCCCEECCCCCCCCEEEECCCCCEEEEEECCCCCEEECCCC
VPETSFVAFQPVRFGPLVLCIGDAGADWPDDVALLEQLLSPAPTPAPRTSRRKVLRTAVG
CCCCCEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AMLALSAAALIPSLQPAFLSNAATGQRPENAVNQAKALLKQLGFREAHAERVGTRVLIEG
HHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEC
LVPSSADAARLRTQVHRYDPGVAVNVAVVDEVLATLRDSLADPALSVRYNGNGVFSVSGS
CCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCC
SDNAERASRRIADVRSDLGPEVRSLHVEISQQDPSVKPPENYDAALLADGLHYVETPDGT
CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCC
KHMTSLPQQAAQ
HHHHHHHHHHCC
>Mature Secondary Structure 
TMQLRVLTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYSSDT
CEEEEEEECCCCCCEEECCCCCEECCCCCCCCEEEECCCCCEEEEEECCCCCEEECCCC
VPETSFVAFQPVRFGPLVLCIGDAGADWPDDVALLEQLLSPAPTPAPRTSRRKVLRTAVG
CCCCCEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AMLALSAAALIPSLQPAFLSNAATGQRPENAVNQAKALLKQLGFREAHAERVGTRVLIEG
HHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEC
LVPSSADAARLRTQVHRYDPGVAVNVAVVDEVLATLRDSLADPALSVRYNGNGVFSVSGS
CCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCC
SDNAERASRRIADVRSDLGPEVRSLHVEISQQDPSVKPPENYDAALLADGLHYVETPDGT
CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCC
KHMTSLPQQAAQ
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA