Click here to switch to the map view.

The map label for this gene is ylbK [H]

Identifier: 21240951

GI number: 21240951

Start: 218389

End: 219426

Strand: Reverse

Name: ylbK [H]

Synonym: XAC0177

Alternate gene names: 21240951

Gene position: 219426-218389 (Counterclockwise)

Preceding gene: 77748515

Following gene: 21240948

Centisome position: 4.24

GC content: 66.76

Gene sequence:

>1038_bases
ATGATCGCGCTCCGCTGCTCCCGCTCGCTCGCCCTGTTGTCCATGCTCGGTCTGCTCAGCGCCTGCGGGGGCGAGCCGCG
CCCGGCGACACCGGCGCCCGTGGTGCAGGCACCTTCGGCCGAAGCCCCCAAGCCCATCAAGATCGGCGTCGCGCTCGGTG
GCGGTGCGGCCAAGGGCTTTGCGCATATCGGGGTGATCAAGATGCTCGAGGCCAACGGCTTCGCACCGGTGGTGGTGTCC
GGTACCAGCGCCGGCAGCGTGGTGGGCGCGCTGTATGCCAGCGGCATGGATGCGTTCCAAATGCAGGAAAAGGCCGTTGC
GCTCGACCAGACCAGCATCCGCGATGTGCGGCTGTTTTCCGGTGGCCTGGTGCAAGGCCAGAAACTGCAGGACTACGTCA
ACGAACAGCTGGGCGGCAAACCGATCGAAAAACTGCGCAAGCCGTTCGCGGCGGTCGCCACGCGTCTGGAAGATGGCGAA
CGCACCGTGTTCGTGCGCGGCAATGCCGGCCAGGCAGTGCGCGCGTCCAGCAGCATTCCCGGCGTGTTCGAGCCGGTGAC
CATCGGTAAGTACCACTTCGTCGATGGCGGCGTGGTCAGCCCGGTGCCGGTGGATGCGGCGCGCCAGCTCGGTGCCGAAT
TCGTGGTGGCCGTGGATATTTCCAGCAAGGCCAGCGGCAAGAATCCGGGGGACCTGCTGGGCACGGTGAACCAGTCGATC
TCGATCATGGGCCAGCGCCTGGGCGAGGCCGAACTCAAACGTGCCGACGTGGTCGTTCGCCCCAAGGTCAACGATATCGG
CTCGGCCGATTTCAACCAGCGTGGTGCGGCGATCCTCGAAGGCGAGCGCGCCGCAATGGCGGTGATGCCGCAGATTCGCG
CCAAGATTGCGCAACTGCAGGCCGCGCGCAGCAGCGCGACACGGACCGCCGCCGATCAGGCCAAAGCGGCCAGGCAACAG
GCGTACGAGCGCTGCCTGGAACAACGCTCGCGTTGGGAAAAATTGCGCGGCAAGGACGAGGCCTGCGTGGCGCCGTGA

Upstream 100 bases:

>100_bases
CGATGCTGTCCTGAATGAGCTCCACTCACGCCAATACCGCCGCAGCAGCAGTGGCAGGGCGCGTGTATTCTCCCTCGCCT
TTCCCATCGACGTTTTCGCC

Downstream 100 bases:

>100_bases
TGCGGCTGCGGTGCGAGGCGATGCGCAGTTGATGCGGGTCCCGCGAGGTCATGCGGAACTGAGCGGGCGTGGGCGCCTGT
TTCCAGACGCGCGCATTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MIALRCSRSLALLSMLGLLSACGGEPRPATPAPVVQAPSAEAPKPIKIGVALGGGAAKGFAHIGVIKMLEANGFAPVVVS
GTSAGSVVGALYASGMDAFQMQEKAVALDQTSIRDVRLFSGGLVQGQKLQDYVNEQLGGKPIEKLRKPFAAVATRLEDGE
RTVFVRGNAGQAVRASSSIPGVFEPVTIGKYHFVDGGVVSPVPVDAARQLGAEFVVAVDISSKASGKNPGDLLGTVNQSI
SIMGQRLGEAELKRADVVVRPKVNDIGSADFNQRGAAILEGERAAMAVMPQIRAKIAQLQAARSSATRTAADQAKAARQQ
AYERCLEQRSRWEKLRGKDEACVAP

Sequences:

>Translated_345_residues
MIALRCSRSLALLSMLGLLSACGGEPRPATPAPVVQAPSAEAPKPIKIGVALGGGAAKGFAHIGVIKMLEANGFAPVVVS
GTSAGSVVGALYASGMDAFQMQEKAVALDQTSIRDVRLFSGGLVQGQKLQDYVNEQLGGKPIEKLRKPFAAVATRLEDGE
RTVFVRGNAGQAVRASSSIPGVFEPVTIGKYHFVDGGVVSPVPVDAARQLGAEFVVAVDISSKASGKNPGDLLGTVNQSI
SIMGQRLGEAELKRADVVVRPKVNDIGSADFNQRGAAILEGERAAMAVMPQIRAKIAQLQAARSSATRTAADQAKAARQQ
AYERCLEQRSRWEKLRGKDEACVAP
>Mature_345_residues
MIALRCSRSLALLSMLGLLSACGGEPRPATPAPVVQAPSAEAPKPIKIGVALGGGAAKGFAHIGVIKMLEANGFAPVVVS
GTSAGSVVGALYASGMDAFQMQEKAVALDQTSIRDVRLFSGGLVQGQKLQDYVNEQLGGKPIEKLRKPFAAVATRLEDGE
RTVFVRGNAGQAVRASSSIPGVFEPVTIGKYHFVDGGVVSPVPVDAARQLGAEFVVAVDISSKASGKNPGDLLGTVNQSI
SIMGQRLGEAELKRADVVVRPKVNDIGSADFNQRGAAILEGERAAMAVMPQIRAKIAQLQAARSSATRTAADQAKAARQQ
AYERCLEQRSRWEKLRGKDEACVAP

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=232, Percent_Identity=31.8965517241379, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI260656039, Length=232, Percent_Identity=31.8965517241379, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI116256487, Length=232, Percent_Identity=31.8965517241379, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI260656043, Length=232, Percent_Identity=31.8965517241379, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI260656037, Length=232, Percent_Identity=31.8965517241379, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI148727335, Length=202, Percent_Identity=33.1683168316832, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI148727290, Length=202, Percent_Identity=33.1683168316832, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI226510936, Length=302, Percent_Identity=33.112582781457, Blast_Score=142, Evalue=4e-35,
Organism=Saccharomyces cerevisiae, GI6323581, Length=196, Percent_Identity=30.6122448979592, Blast_Score=85, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571388, Length=184, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281376913, Length=184, Percent_Identity=28.804347826087, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 36039; Mature: 36039

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALRCSRSLALLSMLGLLSACGGEPRPATPAPVVQAPSAEAPKPIKIGVALGGGAAKGF
CEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCHHHH
AHIGVIKMLEANGFAPVVVSGTSAGSVVGALYASGMDAFQMQEKAVALDQTSIRDVRLFS
HHHHHHHEEECCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHEEEEC
GGLVQGQKLQDYVNEQLGGKPIEKLRKPFAAVATRLEDGERTVFVRGNAGQAVRASSSIP
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCC
GVFEPVTIGKYHFVDGGVVSPVPVDAARQLGAEFVVAVDISSKASGKNPGDLLGTVNQSI
CCCCCEECCEEEEECCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH
SIMGQRLGEAELKRADVVVRPKVNDIGSADFNQRGAAILEGERAAMAVMPQIRAKIAQLQ
HHHHHHHCHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH
AARSSATRTAADQAKAARQQAYERCLEQRSRWEKLRGKDEACVAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIALRCSRSLALLSMLGLLSACGGEPRPATPAPVVQAPSAEAPKPIKIGVALGGGAAKGF
CEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCHHHH
AHIGVIKMLEANGFAPVVVSGTSAGSVVGALYASGMDAFQMQEKAVALDQTSIRDVRLFS
HHHHHHHEEECCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHEEEEC
GGLVQGQKLQDYVNEQLGGKPIEKLRKPFAAVATRLEDGERTVFVRGNAGQAVRASSSIP
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCC
GVFEPVTIGKYHFVDGGVVSPVPVDAARQLGAEFVVAVDISSKASGKNPGDLLGTVNQSI
CCCCCEECCEEEEECCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH
SIMGQRLGEAELKRADVVVRPKVNDIGSADFNQRGAAILEGERAAMAVMPQIRAKIAQLQ
HHHHHHHCHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH
AARSSATRTAADQAKAARQQAYERCLEQRSRWEKLRGKDEACVAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]