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The map label for this gene is yhjC [H]

Identifier: 21240858

GI number: 21240858

Start: 102007

End: 102918

Strand: Direct

Name: yhjC [H]

Synonym: XAC0084

Alternate gene names: 21240858

Gene position: 102007-102918 (Clockwise)

Preceding gene: 21240855

Following gene: 21240860

Centisome position: 1.97

GC content: 66.67

Gene sequence:

>912_bases
GTGGATCGGTTCGATGCCATGCGGTTGTTCGTGCGGATCGTGGAGCGGCGCAGCTTCACCGCAGCGGCCAACGACATGGA
AATTCCGCGCTCCACCGCCACCAAGGTCATTGCCGAGATGGAAGCGCGCCTGGGCGTGCGCCTGCTACAGCGCACCACGC
GCGTGGTGCGGCCCACGCTCGATGGCGAGCTCTTCCATCAACCCTGCATGCGCATCCTGGACGACGTGGACGATGCCGAA
GGCGGCTTCCGCGGCGTGGCACCCAAGGGGCTGTTGCGGGTGGACGTGCAGGGCACGCTGGCGCGGCACTTCTTGCTGCC
CGGGTTGCCGGCGTTCTTTGCACGCTACCCGCAGATCCAGCTGGTGATGAGCGAGAGCGACCGCTGGGTGGATCTGGTGG
AAGAAGGCATCGACTGCGTGCTGCGCTATGGCCCGCTGCGCGACAGCGAATTGGTCGCACGCCGCGTGGCCATGCTCGAA
CGCCTCACCTGCGCCACGCCGCAATACCTGCAATGTTTCGGCATGCCTACGCAGCTGGAAGCGCTGGACCAACACCGCAT
GGTTGGCTTGCGTTCGATCACCACCGGCGTGGTCACGCCGCTGGAGTTCCAGACCGCCCAGGGGCTGCGTACCTTCGCAT
TGCCCAGCCCGCTCAGCGTCACCGGGACCGAAAGCTATCTGGCCGGCATCCGGCTTGGCCTGGGCATCGCGCAGGTGCCG
CGCTTCCATGTGGCGCACGACCTGCAGCAAGGCACGCTGGTGGAAATCCTGCGCGATACCCCGCCGCCGTCCAATCCGGT
GTCGCTGCTGTATTCCCGCGCCCGCCAGCTGTCGCCACGGGTGCGCGTGTTTCTGGACTGGGCCGCTGGCGAATTTGCCA
AACAGGCCGGCGTGGCGCAGCCAATCGGCTAA

Upstream 100 bases:

>100_bases
CTGCGGCGTTGCGGAAACTATCCAATGCAATGACACGACGATCATCACACTAAACTGCACAGCATTGTTTCCAGCGCCCG
AACAGTGGGCAGGGAGTGCC

Downstream 100 bases:

>100_bases
TCGCACCGGCGGGCCTTGTATTGCAGGTGGTCGGTGGCATCCGCAACACGGCGCGCGGCGGCAACCTGCACCATCCGCGC
ATCGCTGTCAGCCATCATCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDRFDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGELFHQPCMRILDDVDDAE
GGFRGVAPKGLLRVDVQGTLARHFLLPGLPAFFARYPQIQLVMSESDRWVDLVEEGIDCVLRYGPLRDSELVARRVAMLE
RLTCATPQYLQCFGMPTQLEALDQHRMVGLRSITTGVVTPLEFQTAQGLRTFALPSPLSVTGTESYLAGIRLGLGIAQVP
RFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDWAAGEFAKQAGVAQPIG

Sequences:

>Translated_303_residues
MDRFDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGELFHQPCMRILDDVDDAE
GGFRGVAPKGLLRVDVQGTLARHFLLPGLPAFFARYPQIQLVMSESDRWVDLVEEGIDCVLRYGPLRDSELVARRVAMLE
RLTCATPQYLQCFGMPTQLEALDQHRMVGLRSITTGVVTPLEFQTAQGLRTFALPSPLSVTGTESYLAGIRLGLGIAQVP
RFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDWAAGEFAKQAGVAQPIG
>Mature_303_residues
MDRFDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGELFHQPCMRILDDVDDAE
GGFRGVAPKGLLRVDVQGTLARHFLLPGLPAFFARYPQIQLVMSESDRWVDLVEEGIDCVLRYGPLRDSELVARRVAMLE
RLTCATPQYLQCFGMPTQLEALDQHRMVGLRSITTGVVTPLEFQTAQGLRTFALPSPLSVTGTESYLAGIRLGLGIAQVP
RFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDWAAGEFAKQAGVAQPIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=36.3945578231293, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=30.4195804195804, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=28.9473684210526, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=30.0675675675676, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=25.886524822695, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787589, Length=282, Percent_Identity=26.5957446808511, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=26, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI157672245, Length=152, Percent_Identity=30.2631578947368, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=141, Percent_Identity=26.9503546099291, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=23.6111111111111, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33749; Mature: 33749

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGELFHQPCMRILDDVDDAEGGFRGVAPKGLLRVDVQGTLARHFLLPGLPAFFARYPQIQ
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHCCCCEE
LVMSESDRWVDLVEEGIDCVLRYGPLRDSELVARRVAMLERLTCATPQYLQCFGMPTQLE
EEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHH
ALDQHRMVGLRSITTGVVTPLEFQTAQGLRTFALPSPLSVTGTESYLAGIRLGLGIAQVP
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHCCHHHCC
RFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDWAAGEFAKQAGVAQ
HHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCC
PIG
CCC
>Mature Secondary Structure
MDRFDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGELFHQPCMRILDDVDDAEGGFRGVAPKGLLRVDVQGTLARHFLLPGLPAFFARYPQIQ
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHCCCCEE
LVMSESDRWVDLVEEGIDCVLRYGPLRDSELVARRVAMLERLTCATPQYLQCFGMPTQLE
EEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHH
ALDQHRMVGLRSITTGVVTPLEFQTAQGLRTFALPSPLSVTGTESYLAGIRLGLGIAQVP
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHCCHHHCC
RFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDWAAGEFAKQAGVAQ
HHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCC
PIG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]