| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21240830
Identifier: 21240830
GI number: 21240830
Start: 68506
End: 69735
Strand: Reverse
Name: 21240830
Synonym: XAC0056
Alternate gene names: NA
Gene position: 69735-68506 (Counterclockwise)
Preceding gene: 21240831
Following gene: 21240829
Centisome position: 1.35
GC content: 70.89
Gene sequence:
>1230_bases GTGACGCCGCATCTGTCGCCTGCATGGCGTGGCCTCGTGCGCGGCTTGTCGGCGCAGTGGCTGTCGATCCTGTTCACCGC TGCGGTCTCGCTGGCGCTGTCGGTGTGGCTGGCACGCGGGATGGGCCCGGCCGGCTTCGGCCGCTACGCCTACCTGCTCA ATCTGGCGACCTTGCTGGCGCTGTTGCAGGATGCCGGCATGCGCACCCTGGTATTGCGCGAAGGGGTTGCGGCCGGAATC CCGGCGACGCTGGCGCGCGCGCTGCCTGGTCTGGCACGCGGGCATCTGCTGTGGTCCACGCTGCTGCTGGTCGCCGCAAC CCTGGCGGCGACGCGCGCCGGCAGCGATCCGGCACTGGTCTGGGCGGTGCTGTGCTTCGGTGCGGTCACGTTGACCCAGC TGGTGTCGGCGCAATTGAAGGCGGCGGGCCAGTGGCAACGCGACGCCAGCTGGCTGGCGGGTGCGCGCGCACTCAGCGCG CTGCTGGTGGTGACGGCGGTGCTGCTGCTCGGTCACGCCCCCGGCGTGGTCTTTGCTGCGTGGGCAGGCGGCCTGCTGTT GGCCTATGTCTGGCTGGGGCGAGGCCTGCATGAGCGACCGCACTGGCGGCCACAGCCGCTGGCGTATCGCGCGGCCGCCG GCTTTTTCTGGATCGACACCGCCACCGGTCTGTACCGTCGCAGCGACGTGGTGATCCTGCAGCACACGGTGCCTGCGGCG GAGGTGGGCCAGTATGCCGCCGCGTATCGCGTGTTCGATGGCGTGCTGTTGCTGGCGATGCCGGTCGCCTTGCTGCTGTT CCGCCAGCTGCGCCTGGCGCGCGCGCAGGCAGGCCGCGCGCGTCGGCTGGAAGATCGCGCCCTGTGGCTGGCCGCTGCGG CGGGGCTGGCACTGGCGGCCAGCGGCGCCTGGCTCGGGAACTGGCTGATGGAGCTGTTGTACGGAGCGTCCTATCGCGCG GTGGCGGGGCAACTGCTGGGCTGGTTGTTTGCCGCCTTCGTATTCGTGCTGCCGAACTACGTACTGACCCAGGCCGCCAT CGCCTGCGACCAGCAGCGTTGGTACGTGCTCGGCGCGAGTGTGGCGGCGGTGGTCAACATCGCGCTGAATCTGCTGCTCA CCCGCCGCTACGGTGTGCACGGCGCAGCGATCGCCGTGATCGCCACCGAGGCGGTGCTGACCGCCACCTTGTGGTGCGGG CTGCGGACTGCAGGGCGCGCGCGCGCATAG
Upstream 100 bases:
>100_bases CCTTGCTGGAACAGGCCGACACCGTGCTGGTCCTGGACCAGGGGCGGTTGGTGGCGCAGGGCCCGTGCCAGGCAGTGGCG CCGATCTGGATCGGCGCCCG
Downstream 100 bases:
>100_bases TCGCGTTGCCGCCGTCGCAATCGCTGTGGCACAGTGCTGGCGATACGGCGTGGCGCTTCCATGCCTCCCTTGAACCGCAG CGACGATCTGATGCCGGGTA
Product: polysaccharide export protein
Products: NA
Alternate protein names: Polysaccharide Biosynthesis Protein
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MTPHLSPAWRGLVRGLSAQWLSILFTAAVSLALSVWLARGMGPAGFGRYAYLLNLATLLALLQDAGMRTLVLREGVAAGI PATLARALPGLARGHLLWSTLLLVAATLAATRAGSDPALVWAVLCFGAVTLTQLVSAQLKAAGQWQRDASWLAGARALSA LLVVTAVLLLGHAPGVVFAAWAGGLLLAYVWLGRGLHERPHWRPQPLAYRAAAGFFWIDTATGLYRRSDVVILQHTVPAA EVGQYAAAYRVFDGVLLLAMPVALLLFRQLRLARAQAGRARRLEDRALWLAAAAGLALAASGAWLGNWLMELLYGASYRA VAGQLLGWLFAAFVFVLPNYVLTQAAIACDQQRWYVLGASVAAVVNIALNLLLTRRYGVHGAAIAVIATEAVLTATLWCG LRTAGRARA
Sequences:
>Translated_409_residues MTPHLSPAWRGLVRGLSAQWLSILFTAAVSLALSVWLARGMGPAGFGRYAYLLNLATLLALLQDAGMRTLVLREGVAAGI PATLARALPGLARGHLLWSTLLLVAATLAATRAGSDPALVWAVLCFGAVTLTQLVSAQLKAAGQWQRDASWLAGARALSA LLVVTAVLLLGHAPGVVFAAWAGGLLLAYVWLGRGLHERPHWRPQPLAYRAAAGFFWIDTATGLYRRSDVVILQHTVPAA EVGQYAAAYRVFDGVLLLAMPVALLLFRQLRLARAQAGRARRLEDRALWLAAAAGLALAASGAWLGNWLMELLYGASYRA VAGQLLGWLFAAFVFVLPNYVLTQAAIACDQQRWYVLGASVAAVVNIALNLLLTRRYGVHGAAIAVIATEAVLTATLWCG LRTAGRARA >Mature_408_residues TPHLSPAWRGLVRGLSAQWLSILFTAAVSLALSVWLARGMGPAGFGRYAYLLNLATLLALLQDAGMRTLVLREGVAAGIP ATLARALPGLARGHLLWSTLLLVAATLAATRAGSDPALVWAVLCFGAVTLTQLVSAQLKAAGQWQRDASWLAGARALSAL LVVTAVLLLGHAPGVVFAAWAGGLLLAYVWLGRGLHERPHWRPQPLAYRAAAGFFWIDTATGLYRRSDVVILQHTVPAAE VGQYAAAYRVFDGVLLLAMPVALLLFRQLRLARAQAGRARRLEDRALWLAAAAGLALAASGAWLGNWLMELLYGASYRAV AGQLLGWLFAAFVFVLPNYVLTQAAIACDQQRWYVLGASVAAVVNIALNLLLTRRYGVHGAAIAVIATEAVLTATLWCGL RTAGRARA
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43533; Mature: 43402
Theoretical pI: Translated: 11.46; Mature: 11.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPHLSPAWRGLVRGLSAQWLSILFTAAVSLALSVWLARGMGPAGFGRYAYLLNLATLLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LLQDAGMRTLVLREGVAAGIPATLARALPGLARGHLLWSTLLLVAATLAATRAGSDPALV HHHHCCCHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH WAVLCFGAVTLTQLVSAQLKAAGQWQRDASWLAGARALSALLVVTAVLLLGHAPGVVFAA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH WAGGLLLAYVWLGRGLHERPHWRPQPLAYRAAAGFFWIDTATGLYRRSDVVILQHTVPAA HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCHHCCCCEEEEEECCCHH EVGQYAAAYRVFDGVLLLAMPVALLLFRQLRLARAQAGRARRLEDRALWLAAAAGLALAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SGAWLGNWLMELLYGASYRAVAGQLLGWLFAAFVFVLPNYVLTQAAIACDQQRWYVLGAS CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH VAAVVNIALNLLLTRRYGVHGAAIAVIATEAVLTATLWCGLRTAGRARA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TPHLSPAWRGLVRGLSAQWLSILFTAAVSLALSVWLARGMGPAGFGRYAYLLNLATLLA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LLQDAGMRTLVLREGVAAGIPATLARALPGLARGHLLWSTLLLVAATLAATRAGSDPALV HHHHCCCHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH WAVLCFGAVTLTQLVSAQLKAAGQWQRDASWLAGARALSALLVVTAVLLLGHAPGVVFAA HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH WAGGLLLAYVWLGRGLHERPHWRPQPLAYRAAAGFFWIDTATGLYRRSDVVILQHTVPAA HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCEEEEECCCCHHCCCCEEEEEECCCHH EVGQYAAAYRVFDGVLLLAMPVALLLFRQLRLARAQAGRARRLEDRALWLAAAAGLALAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SGAWLGNWLMELLYGASYRAVAGQLLGWLFAAFVFVLPNYVLTQAAIACDQQRWYVLGAS CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH VAAVVNIALNLLLTRRYGVHGAAIAVIATEAVLTATLWCGLRTAGRARA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA