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The map label for this gene is rmd [H]

Identifier: 21240828

GI number: 21240828

Start: 66191

End: 67147

Strand: Reverse

Name: rmd [H]

Synonym: XAC0054

Alternate gene names: 21240828

Gene position: 67147-66191 (Counterclockwise)

Preceding gene: 21240829

Following gene: 21240827

Centisome position: 1.3

GC content: 68.97

Gene sequence:

>957_bases
ATGATGCGGGTGCTGGTCACCGGCGCGGCCGGGATGATCGGGAGACGCGTGGCGAGCGCGCTGTTGCAGCGAGGCGACGC
GGTGGCAGGCCTGGACGATCTGTCCAGCGGCATGTCCCTGCCGCACGGCCTGCATGCGGCCATCGTTGCCGACGTGGGCG
AGCGTGAGACGGTCGCCGTCGCGTTGCGCGAGTTCCGCGCCGATGCGCTGATCCATCTGGCCGCCATCCACCATATTCCC
ACCTGCGAGACGCAGCGCATGCGTTGCCTGCAGGTCAACGTGGTCGGCACCGAGAGCGTGCTGCACGCCGCCAGCGACGC
GGCGCTGCGGCAGGTCGTGATCGCCTCCAGCGGCGCGGTCTACGCCTGGGGCGACGGCGCGCTGGACGAACACGTCAGCG
CCACCGACGCGCGCGACAACTATGCGCTGTCCAAACTTTGCAACGAAGCGCAATTGCGCTTGTGGTGCGCTGCCGCGAAC
GGCCGGCGCGGGCGCGCGGCGCGGCTGTTCAACACCATCGCCCATGACGATCCCAATGCGCACCTGATACCGGACGTGTT
GGCGCAACTGGCGGCCGATCCGGCCGCGACGCCAACCTTGCGCCTGGGCAACCTGCAACCGTGCCGGGACTATCTCCACG
CAGACGACGCTGCGGCAGGGCTGATCGCACTGCTCGACGATGCGCGGCCGGACCCGGCCTTCGATGTCTTCAATCTGTGC
TCGGGCGTTGAGCATTCGGTTGCCGAACTGGTGGAGCAGATCGGCGCCGTGCTAGGGCGATCGCCGCGCCTGGAAGTCGA
CCCGCAGCGTCAGCGGCGTATCGACCGTCTCCATCAGTTGGGCGATCCGGGCAAGGCGGCGCGCGTGCTGGGTTGGCGTG
CACGCTGGAGTCTGCGCGAGGCACTGCAGCGCGTATTGGGAGTCACCGATGCGCCCACCGCCGGGCAACATGCGTGA

Upstream 100 bases:

>100_bases
CATCCTGGTCGGCGCACGCCGATCCGTTGTTTGCGTGGTTGCCGCAGCGCATGCGTGGCCTGTTGCTCGGGCCGACCGAC
GCGCGCCCGCTGGGGTCTGG

Downstream 100 bases:

>100_bases
GCCCGCGCGATGCGATCACCTCGCCCGCTGCCACGCTGATCGCAACGCCTGCGGTGCAAACAGCCCGCGTTGTCGTGCGA
CACCATCGGCGCATCACCAT

Product: degenerated UDP-glucose epimerase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MMRVLVTGAAGMIGRRVASALLQRGDAVAGLDDLSSGMSLPHGLHAAIVADVGERETVAVALREFRADALIHLAAIHHIP
TCETQRMRCLQVNVVGTESVLHAASDAALRQVVIASSGAVYAWGDGALDEHVSATDARDNYALSKLCNEAQLRLWCAAAN
GRRGRAARLFNTIAHDDPNAHLIPDVLAQLAADPAATPTLRLGNLQPCRDYLHADDAAAGLIALLDDARPDPAFDVFNLC
SGVEHSVAELVEQIGAVLGRSPRLEVDPQRQRRIDRLHQLGDPGKAARVLGWRARWSLREALQRVLGVTDAPTAGQHA

Sequences:

>Translated_318_residues
MMRVLVTGAAGMIGRRVASALLQRGDAVAGLDDLSSGMSLPHGLHAAIVADVGERETVAVALREFRADALIHLAAIHHIP
TCETQRMRCLQVNVVGTESVLHAASDAALRQVVIASSGAVYAWGDGALDEHVSATDARDNYALSKLCNEAQLRLWCAAAN
GRRGRAARLFNTIAHDDPNAHLIPDVLAQLAADPAATPTLRLGNLQPCRDYLHADDAAAGLIALLDDARPDPAFDVFNLC
SGVEHSVAELVEQIGAVLGRSPRLEVDPQRQRRIDRLHQLGDPGKAARVLGWRARWSLREALQRVLGVTDAPTAGQHA
>Mature_318_residues
MMRVLVTGAAGMIGRRVASALLQRGDAVAGLDDLSSGMSLPHGLHAAIVADVGERETVAVALREFRADALIHLAAIHHIP
TCETQRMRCLQVNVVGTESVLHAASDAALRQVVIASSGAVYAWGDGALDEHVSATDARDNYALSKLCNEAQLRLWCAAAN
GRRGRAARLFNTIAHDDPNAHLIPDVLAQLAADPAATPTLRLGNLQPCRDYLHADDAAAGLIALLDDARPDPAFDVFNLC
SGVEHSVAELVEQIGAVLGRSPRLEVDPQRQRRIDRLHQLGDPGKAARVLGWRARWSLREALQRVLGVTDAPTAGQHA

Specific function: Can have functions other than metabolism of galactose. It also could be involved in preparation of carbohydrate residues for incorporation into complex polymers, such as exopolysaccharides [H]

COG id: COG1087

COG function: function code M; UDP-glucose 4-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI42516563, Length=336, Percent_Identity=24.702380952381, Blast_Score=78, Evalue=9e-15,
Organism=Escherichia coli, GI1786974, Length=329, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788365, Length=313, Percent_Identity=27.1565495207668, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19923002, Length=329, Percent_Identity=27.6595744680851, Blast_Score=85, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR005886
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 33954; Mature: 33954

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRVLVTGAAGMIGRRVASALLQRGDAVAGLDDLSSGMSLPHGLHAAIVADVGERETVAV
CEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCHHHHH
ALREFRADALIHLAAIHHIPTCETQRMRCLQVNVVGTESVLHAASDAALRQVVIASSGAV
HHHHHHHHHHHHHHHHHCCCCCCHHCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCE
YAWGDGALDEHVSATDARDNYALSKLCNEAQLRLWCAAANGRRGRAARLFNTIAHDDPNA
EEECCCCHHHHCCCCCCCCHHHHHHHHCHHHEEEEEEECCCCCCHHHHHHHHHHCCCCCC
HLIPDVLAQLAADPAATPTLRLGNLQPCRDYLHADDAAAGLIALLDDARPDPAFDVFNLC
CCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
SGVEHSVAELVEQIGAVLGRSPRLEVDPQRQRRIDRLHQLGDPGKAARVLGWRARWSLRE
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ALQRVLGVTDAPTAGQHA
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MMRVLVTGAAGMIGRRVASALLQRGDAVAGLDDLSSGMSLPHGLHAAIVADVGERETVAV
CEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCHHHHH
ALREFRADALIHLAAIHHIPTCETQRMRCLQVNVVGTESVLHAASDAALRQVVIASSGAV
HHHHHHHHHHHHHHHHHCCCCCCHHCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCE
YAWGDGALDEHVSATDARDNYALSKLCNEAQLRLWCAAANGRRGRAARLFNTIAHDDPNA
EEECCCCHHHHCCCCCCCCHHHHHHHHCHHHEEEEEEECCCCCCHHHHHHHHHHCCCCCC
HLIPDVLAQLAADPAATPTLRLGNLQPCRDYLHADDAAAGLIALLDDARPDPAFDVFNLC
CCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
SGVEHSVAELVEQIGAVLGRSPRLEVDPQRQRRIDRLHQLGDPGKAARVLGWRARWSLRE
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ALQRVLGVTDAPTAGQHA
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788721 [H]