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The map label for this gene is exbD1 [H]

Identifier: 21240784

GI number: 21240784

Start: 12548

End: 12970

Strand: Direct

Name: exbD1 [H]

Synonym: XAC0010

Alternate gene names: 21240784

Gene position: 12548-12970 (Clockwise)

Preceding gene: 21240783

Following gene: 21240785

Centisome position: 0.24

GC content: 59.57

Gene sequence:

>423_bases
ATGGCCTTCAGTAGTGGAAACAGCGGTGGCCCGATGGCCGACATCAACGTGACGCCCCTCGTGGACGTGATGTTGGTGCT
GCTGATCATCTTCATCATTACGGCACCGCTGATGTCCCATAAGGTCAAGGTGGAGCTGCCAGAGGCCAACTTGATCCAGA
AGGAAGATGCGGAGAAACGTGCCGCGCCGATCACTCTGGCCGTCAAGGAAGATGGGTCGCTGTACTGGAACGACGAGCCG
ATTTCCAAGGAAGCCCTGGAGTCGCGCCTGTCCACCGCCGCACAGCAGACCCCGCAGCCGCCGCTCAACCTGCGTGGCGA
CCGCACGACCAAGATGCGTACGATCAACGAGATCACCAAGATCGCGCAGGGTCAGGGCATGCTGGACGTCGGTTTCGTTG
CAACCAAAGTGAAGGGGCAGTAA

Upstream 100 bases:

>100_bases
ACCTTCGCCCACGACCTGCACGACTTCTTCGCCACCGGTTCGCGCGTTCGCTAATCCGGTCGTCAAGAACGCCTTCGCAA
CGATTTAGACGGAGCCCGTT

Downstream 100 bases:

>100_bases
GCCATGGCATTTAGTACTGGTGGAAGCCGTGGGCCGATGGCCGACATCAACGTCACGCCCCTGGTGGACGTGATGCTGGT
GCTGCTGATCATCTTCATCG

Product: biopolymer transport ExbD1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MAFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPEANLIQKEDAEKRAAPITLAVKEDGSLYWNDEP
ISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITKIAQGQGMLDVGFVATKVKGQ

Sequences:

>Translated_140_residues
MAFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPEANLIQKEDAEKRAAPITLAVKEDGSLYWNDEP
ISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITKIAQGQGMLDVGFVATKVKGQ
>Mature_139_residues
AFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPEANLIQKEDAEKRAAPITLAVKEDGSLYWNDEPI
SKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITKIAQGQGMLDVGFVATKVKGQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=127, Percent_Identity=35.4330708661417, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15185; Mature: 15054

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPEANLIQKEDAEKR
CCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHH
AAPITLAVKEDGSLYWNDEPISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITK
CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
IAQGQGMLDVGFVATKVKGQ
HHCCCCCEEECEEEEEECCC
>Mature Secondary Structure 
AFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVELPEANLIQKEDAEKR
CCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHH
AAPITLAVKEDGSLYWNDEPISKEALESRLSTAAQQTPQPPLNLRGDRTTKMRTINEITK
CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
IAQGQGMLDVGFVATKVKGQ
HHCCCCCEEECEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]