| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228812
Identifier: 21228812
GI number: 21228812
Start: 3239209
End: 3240255
Strand: Reverse
Name: 21228812
Synonym: MM_2710
Alternate gene names: NA
Gene position: 3240255-3239209 (Counterclockwise)
Preceding gene: 21228817
Following gene: 21228811
Centisome position: 79.1
GC content: 38.87
Gene sequence:
>1047_bases ATGAAAAAATTAGTGGTTGTTAGATATCTGGCTTATATCACATTTATATTAATCATACTCAGCATACTGTCTGGAGAAGC ATTTGCTGCCAAATCTTCACCGGAGAATGGAAATCGAAATCAGTATGCAGATGAAAATACTATCGATACAGAAAATTATG AAAACAGTTCAGAAAAGAATAGAGGTACTGAAAGTTCAGGTTCCGAAAGCGTGAAGGAAGAGGAAAGAATCCAGACGCAG GACAGGGATAAATATACAGCTTATAAACTGGAAAGAAAACATACCCAGGAAGAGCTTCAGTTACAGAAAAGTGAATACAG GGAAGCAAAAGGGGATTTCCTGAAAGTAAGAAATAAAATTCAGACAGGAAAAATTAATCCGGGTTCTGAAGAAGCTATAG ATGCCACTAAAGTCTACCTTAATTCAAGTATCAGCTATATGATAGCCCACCTGAAAAATGTAAAAACCAATATGCAGCAT TCAAACGGCAGTGGAGCAGAAGAAAAGATAGCTGCTATAGATGAAAGCATTAAAAGGCTTGAGGCTGAACAGGCAGCAGT TAAAGATGCATCCAGCCAGGCTGAACTCATTACTTCAGTCAGTTCCGTGCGCGGGATATGGACCAATGCACAGAAAGCCA GCCTGGCAGGTGCAGGGCAAATCGTTAGCCAGAAAGTAGGGGAGTTCCTTGAGAAATCAGAAAATCTCTCTGGCGGGCTT GAGGTTCAGATTCAAAGCCTGAACGAAACCGGTGTCAATACTGCTGATCTTCAGACAAGGCTTGCCAGTTATAATCAATA TATAAAAGCTGCCCGTGAGAAGAAAGCAACTGCTGATTCTATTTATGAAGACGACACTGCTACCCAGAACGATCTGAAAG TGGCAAACAATTATCTGCGTGAATCTCTAAATAATGTGAATAAGGCGAATCAGATACTTAAAGTAATTTTCGATGAATTG AAGGGACATGGCTTTAATGAAATCGGAAAAGTTATAACAGAAAATGATATAAAAACAGAACTTAATAATACAAAAGGTAC AGATTAA
Upstream 100 bases:
>100_bases AGCAAATATAATATAATTTATCAGTTTTATTCTGAAAAGTATGCTTATATGTCACTATTCCATTATCACAGTATTATAAC TTGCCAAAGGAGGCAGTCAG
Downstream 100 bases:
>100_bases TAATTATCTATATGAATTGATAATTAATCTGTAAAAACGGTACTCCTGTAAACGAATTAATTATTCAGAAGCAGAATAAA AAACATCCCCCAGAAGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MKKLVVVRYLAYITFILIILSILSGEAFAAKSSPENGNRNQYADENTIDTENYENSSEKNRGTESSGSESVKEEERIQTQ DRDKYTAYKLERKHTQEELQLQKSEYREAKGDFLKVRNKIQTGKINPGSEEAIDATKVYLNSSISYMIAHLKNVKTNMQH SNGSGAEEKIAAIDESIKRLEAEQAAVKDASSQAELITSVSSVRGIWTNAQKASLAGAGQIVSQKVGEFLEKSENLSGGL EVQIQSLNETGVNTADLQTRLASYNQYIKAAREKKATADSIYEDDTATQNDLKVANNYLRESLNNVNKANQILKVIFDEL KGHGFNEIGKVITENDIKTELNNTKGTD
Sequences:
>Translated_348_residues MKKLVVVRYLAYITFILIILSILSGEAFAAKSSPENGNRNQYADENTIDTENYENSSEKNRGTESSGSESVKEEERIQTQ DRDKYTAYKLERKHTQEELQLQKSEYREAKGDFLKVRNKIQTGKINPGSEEAIDATKVYLNSSISYMIAHLKNVKTNMQH SNGSGAEEKIAAIDESIKRLEAEQAAVKDASSQAELITSVSSVRGIWTNAQKASLAGAGQIVSQKVGEFLEKSENLSGGL EVQIQSLNETGVNTADLQTRLASYNQYIKAAREKKATADSIYEDDTATQNDLKVANNYLRESLNNVNKANQILKVIFDEL KGHGFNEIGKVITENDIKTELNNTKGTD >Mature_348_residues MKKLVVVRYLAYITFILIILSILSGEAFAAKSSPENGNRNQYADENTIDTENYENSSEKNRGTESSGSESVKEEERIQTQ DRDKYTAYKLERKHTQEELQLQKSEYREAKGDFLKVRNKIQTGKINPGSEEAIDATKVYLNSSISYMIAHLKNVKTNMQH SNGSGAEEKIAAIDESIKRLEAEQAAVKDASSQAELITSVSSVRGIWTNAQKASLAGAGQIVSQKVGEFLEKSENLSGGL EVQIQSLNETGVNTADLQTRLASYNQYIKAAREKKATADSIYEDDTATQNDLKVANNYLRESLNNVNKANQILKVIFDEL KGHGFNEIGKVITENDIKTELNNTKGTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38647; Mature: 38647
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLVVVRYLAYITFILIILSILSGEAFAAKSSPENGNRNQYADENTIDTENYENSSEKN CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC RGTESSGSESVKEEERIQTQDRDKYTAYKLERKHTQEELQLQKSEYREAKGDFLKVRNKI CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTGKINPGSEEAIDATKVYLNSSISYMIAHLKNVKTNMQHSNGSGAEEKIAAIDESIKRL HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH EAEQAAVKDASSQAELITSVSSVRGIWTNAQKASLAGAGQIVSQKVGEFLEKSENLSGGL HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EVQIQSLNETGVNTADLQTRLASYNQYIKAAREKKATADSIYEDDTATQNDLKVANNYLR EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ESLNNVNKANQILKVIFDELKGHGFNEIGKVITENDIKTELNNTKGTD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCCCCCC >Mature Secondary Structure MKKLVVVRYLAYITFILIILSILSGEAFAAKSSPENGNRNQYADENTIDTENYENSSEKN CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC RGTESSGSESVKEEERIQTQDRDKYTAYKLERKHTQEELQLQKSEYREAKGDFLKVRNKI CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTGKINPGSEEAIDATKVYLNSSISYMIAHLKNVKTNMQHSNGSGAEEKIAAIDESIKRL HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH EAEQAAVKDASSQAELITSVSSVRGIWTNAQKASLAGAGQIVSQKVGEFLEKSENLSGGL HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EVQIQSLNETGVNTADLQTRLASYNQYIKAAREKKATADSIYEDDTATQNDLKVANNYLR EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ESLNNVNKANQILKVIFDELKGHGFNEIGKVITENDIKTELNNTKGTD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA