Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21228782

Identifier: 21228782

GI number: 21228782

Start: 3205117

End: 3205377

Strand: Reverse

Name: 21228782

Synonym: MM_2680

Alternate gene names: NA

Gene position: 3205377-3205117 (Counterclockwise)

Preceding gene: 21228783

Following gene: 21228779

Centisome position: 78.25

GC content: 27.2

Gene sequence:

>261_bases
GTGTATGAAATAATAATCAGTGAAAAACTTTCAAAAAAACTAATAAAATTAAGGAAAAAGAATATTTTACAATTTAATGC
TATTTTTAAAAAAGCAGAAGAAATCCAGATTGACCCACAGAGGTATAAAAACCTAAGATATCCATTAAACAATCTTAAGC
GTGTACATATTGATTCTCATTTCGTGCTACTTTACTCTGTTGATGAAGAAACAAAAACAATAATATTAGAAGATTTCATC
CATCACGACTTCGCTTACTAA

Upstream 100 bases:

>100_bases
TGCAAAATATAATTGCAGGAAAACATATAGGGCCCTTTAAAACTGTTGATGATTTAAAAGCATACATAGAAAGTTTGCCT
GATGAGGAAGAGGATGAATT

Downstream 100 bases:

>100_bases
TCTGACGAAAGGTGTTTAAAGTCGAAGACTTCTTTTACAAAGTTATTCAATAGATTTAATAAAGTCGTCCACAAGTAAAT
GGGTTATGAATATTGCTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MYEIIISEKLSKKLIKLRKKNILQFNAIFKKAEEIQIDPQRYKNLRYPLNNLKRVHIDSHFVLLYSVDEETKTIILEDFI
HHDFAY

Sequences:

>Translated_86_residues
MYEIIISEKLSKKLIKLRKKNILQFNAIFKKAEEIQIDPQRYKNLRYPLNNLKRVHIDSHFVLLYSVDEETKTIILEDFI
HHDFAY
>Mature_86_residues
MYEIIISEKLSKKLIKLRKKNILQFNAIFKKAEEIQIDPQRYKNLRYPLNNLKRVHIDSHFVLLYSVDEETKTIILEDFI
HHDFAY

Specific function: Unknown

COG id: COG2026

COG function: function code JD; Cytotoxic translational repressor of toxin-antitoxin stability system

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1173 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10463; Mature: 10463

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEIIISEKLSKKLIKLRKKNILQFNAIFKKAEEIQIDPQRYKNLRYPLNNLKRVHIDSH
CEEEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHCEECHHHHCCCCCCCCCCEEEEECCE
FVLLYSVDEETKTIILEDFIHHDFAY
EEEEEEECCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYEIIISEKLSKKLIKLRKKNILQFNAIFKKAEEIQIDPQRYKNLRYPLNNLKRVHIDSH
CEEEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHCEECHHHHCCCCCCCCCCEEEEECCE
FVLLYSVDEETKTIILEDFIHHDFAY
EEEEEEECCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]