| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228754
Identifier: 21228754
GI number: 21228754
Start: 3167640
End: 3168107
Strand: Reverse
Name: 21228754
Synonym: MM_2652
Alternate gene names: NA
Gene position: 3168107-3167640 (Counterclockwise)
Preceding gene: 21228755
Following gene: 21228751
Centisome position: 77.34
GC content: 44.44
Gene sequence:
>468_bases ATGCAGATAATAAATACCTCACAGGGAGTAGGAGGCATCCTGAACAGCTTCAAGAGTCTCCTGAACGGAGTAGAAAAGAT TACATTTGTCGGAACACCGGGTTTCTGCACCCCCTTCGCAGAACTTATGGGTTTTGTTGCCAGGGACAAAAAACTTATTT TTATTCCCAATATGGACTTTGAAAAAGCCAGGTTAATATCCATGACTCCTGAAGGGATGCAACTTGGAGAACCTATAGAC GCCCATGCTGATGCTGTTGTCCTGCTCGGCGGGCTTGCGATGCCCAAGATCGGCGTCAGCCCTGACAAAGCTAAGGAGAT TGCAGAAAAGGTCCTTGAAGGTTCAAATAAACGAAAAATTATCGGGGTCTGTTTCCAGTCAATGTTTATGCAGCAGAAAT GGGACGAGGTTATCAGTTTTGATTATATCATCAATGCTGACCTGGCAGTTGAGGTTCTTAAAAGCTAA
Upstream 100 bases:
>100_bases TATTTATGGGAATGTTTCCAATCTTATTGTGAAAGTAGGTACTGTAGAAAGCGGTTAAAAGCAGAATTTTTTATAATAGA TGAATAAGGAGAAGAGTTTC
Downstream 100 bases:
>100_bases AAACCTGACACTGGAAAAAGCAGGAGACTACCAGACTGAATAAAAAAGATTAGATCGAAGTCTCAAAATTATTTACAACT ACTTCTTTTTCCATTTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 155; Mature: 155
Protein sequence:
>155_residues MQIINTSQGVGGILNSFKSLLNGVEKITFVGTPGFCTPFAELMGFVARDKKLIFIPNMDFEKARLISMTPEGMQLGEPID AHADAVVLLGGLAMPKIGVSPDKAKEIAEKVLEGSNKRKIIGVCFQSMFMQQKWDEVISFDYIINADLAVEVLKS
Sequences:
>Translated_155_residues MQIINTSQGVGGILNSFKSLLNGVEKITFVGTPGFCTPFAELMGFVARDKKLIFIPNMDFEKARLISMTPEGMQLGEPID AHADAVVLLGGLAMPKIGVSPDKAKEIAEKVLEGSNKRKIIGVCFQSMFMQQKWDEVISFDYIINADLAVEVLKS >Mature_155_residues MQIINTSQGVGGILNSFKSLLNGVEKITFVGTPGFCTPFAELMGFVARDKKLIFIPNMDFEKARLISMTPEGMQLGEPID AHADAVVLLGGLAMPKIGVSPDKAKEIAEKVLEGSNKRKIIGVCFQSMFMQQKWDEVISFDYIINADLAVEVLKS
Specific function: Unknown
COG id: COG4090
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ1183 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009183 [H]
Pfam domain/function: PF09897 DUF2124 [H]
EC number: NA
Molecular weight: Translated: 16940; Mature: 16940
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIINTSQGVGGILNSFKSLLNGVEKITFVGTPGFCTPFAELMGFVARDKKLIFIPNMDF CCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCC EKARLISMTPEGMQLGEPIDAHADAVVLLGGLAMPKIGVSPDKAKEIAEKVLEGSNKRKI CHHEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH IGVCFQSMFMQQKWDEVISFDYIINADLAVEVLKS HHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHCC >Mature Secondary Structure MQIINTSQGVGGILNSFKSLLNGVEKITFVGTPGFCTPFAELMGFVARDKKLIFIPNMDF CCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCC EKARLISMTPEGMQLGEPIDAHADAVVLLGGLAMPKIGVSPDKAKEIAEKVLEGSNKRKI CHHEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH IGVCFQSMFMQQKWDEVISFDYIINADLAVEVLKS HHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]