| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is pdtaS [H]
Identifier: 21228748
GI number: 21228748
Start: 3158469
End: 3161120
Strand: Reverse
Name: pdtaS [H]
Synonym: MM_2646
Alternate gene names: 21228748
Gene position: 3161120-3158469 (Counterclockwise)
Preceding gene: 21228749
Following gene: 21228747
Centisome position: 77.17
GC content: 41.89
Gene sequence:
>2652_bases ATGAAGAAAAAGTTAAGAGAGCCTGGTGCCGAGACTACAGGAAATGAACGGGTGGAAGATCTTCTGAACCAGGCTGAACA ATACATCAGGCTCGAGAACATTTCCTCACCTTCCCGGAAGATAAAAGAAAAAGGACTTGCTGAGATTATTGATGTTCAGG CGGTCCAGTCCCTCATGGAGGACTTTTATAAGCTTGCCCGCATCCCTATGTGCCTGGAAGACCTTGAAGGCAATATTCTG GTGGGCGTCGGCTGGCAGGATATCTGCATCAGGTACCACAGGGCAGATCCTGAGACCTGCAAACGCTGTATCGAAAATAG TGCGAAGTTGGCAGAAGGTATTGCGCCTGGAGAGTTTAAGCTGTGCAGGTGCAGAAACAGTATGTGGAAGATGGCAACCC CAATGATCGTCAGCGATCAGCATGTAGGCAATATTTTTTCAGGGCACTTCTTTTTTGATGATGAACCTCTGGATTATGAG TTTTTCCGAGCCAGGGCAGGAAAATATGGCTTTAATGAAAAGGAATACATAGAGGCTCTTGAAAAAGTCCCGAGGTTGAG CAGGGAAGCTGTAAACACAGGAATGTCCTTCTTCATGAAATTTGCCAGCATGGTCTTACAGGTAAGTTACAGCAATTTCA GGTTATATCAGGCTCTGGAAGAACGCAACGTACTGATGAATTCGCTGCGTGAGAGTGAGGAAAAATGCCGCAGTTTTTTA GAGGCAGCAAATGAAGGGATATGGATAATTAACGCTGAAGATAAGACCATTTATGTAAATAAAAAAATGTCCGGGATGCT GGGATATACTCAGCAAGAGATGATAGGCAGACCCGGGTGGGACTTCATAGATGAAAAAGACAGGTGTGTTTCCGAAAAGA TCAGGGAAAAAAAGCATCAGGATATAGATGAAAGCCATGAATTCAAATTTATATGTAAAGATGGCTCTCCCTTATGGGCA CTTGTTAATACCAAATCCTTTTTTGACAGGGACGGAAATTTTGCAGGCTGTATCTGGATGTTCACAGATATCACAGACCG TAAACAGGCTGAAGAAGCCCTTATCAGGAGAGAAAATGAGTTCCGTACACTGGCTGAAAATTCTCCTGATATAATTGCCC GATATGACAGACAAAAACGCTACATTTACGTTAACCCTGCTGCTGCAGAGCCTTCAGGTTACTCTCCGGAAGAAATCATG GGGAAAAACAGTATTGAACTGGGAATAGATCCTGAAACAACAAAGTTCTGGGAAGAGAGTATTGAAAACGTTTTCATAAC AGGAAAACCCGAAACAATTGAATTCAATTACATGTCCCCTGAAGGAAAAGATTACTATTTTAATACACAGCTGGTTCCTG AATTTATTGATGAGAAAGTAAACTCTGTCCTTGCCATTTCCCGTGATATAACAGATAAAAAAATAGCAGAAGCTAAATTG AAAGAAACACTTGAGAATCTGGAAAGATTGGTAAGAAAAAGAACCGCAGAACTGGAAAAAGCCTATTATTCATTAAAAGA AAGCGAAAAAGGCCTTGCTGAAGCCCAGGAAATGGCCCATATAGGGAACTGGGAATGGGATATTGCAGCTAATAAAACAT ACTGGTCTGAAGAAATGTACCATATTTTCGGACGGGATACTAACAGGCCAGCTCCGGTTTACACTGAACACCTGAATTAT ATACATCCCGATGACAGGGACTATTTTGACTCCTCCACAAGGAAAGCTGGAAGTGAAAAAACTTCCATTATTGAGTACAG GATTGTGCTGGACAGCGGGGAGGAACGTACAGTACACATGCGGGCTCAGGCAGTTTTTAATGAGGAAAATATCCCCATTA AAGTAAAAGGAACGGTTCAGGATATCACTGAGCGTAAAAAAGCCGAACAGACACTTGTAAACCTTGAGATAGCCCGTAAG AAGGAAATCCACCACAGGATAAAGAATAACCTCCAGGTCATATCATCTCTTCTGGATCTCCAGGCTGAAAATTTCAGCAG CAAGACATGCATTAAAAACTCCGATGTTCTTAATGCTTTCAGGGAAAGCCAGGACAGAATAATGTCTATTGCCCTGATTC ACGAAGAACTCCATGAAGGCGGAGGAAATAACGCACTGTATTTTTCTCCTTATCTTGAAAAACTCGTTGAGAATCTTTTC CAGACATACAGCCTTGGAAATGCCAGCATCAGTTTATATACGGATCTTGAAGAGGATATATTTTTTGACATGGATACGGC TGTTCCTTTAGGGATAATTGTCAATGAACTTGTTTCCAACTCTTTAAAACACGCATTTAAAGGTAGAAGCGAAGGGGAAA TTCAGATCAAACTATTTAAAGAAGGGAGTGGCGGAGAAGAAAAAACCGAAAGCGGAATGGAAAAGAATAAGAAAAGACCT GCTGGAAAGGATACAGGCACTGCAGATACAGGTTATGTACTGGTTGTCTCGGATGACGGGGCTGGAATTCCTGAAACAAT AAATCTGGAAAACTCGGATTCTCTTGGTTTGCAGCTTGTAAACATCCTGGTAGACCAGCTTGAAGGGGAAATCGAGCTAA AGAGAGATAACGGTACTGAATTCATGATAAAAATCAATGTACGGCAAGGTTCTTTAAAGTCCCAGGCTGAGGAAAAAAAC TCACAAAACTGA
Upstream 100 bases:
>100_bases CAGAAAGCAATCAGTTATAAATGTTCAAAGCTGAAGTTTTTCAAACCATAGTTTTCAAATCATAGTTTTCAAAGTTAGAT TTAAAAGCTGGGGATCCTGA
Downstream 100 bases:
>100_bases GGATTTGTGATTTAAAATTAAAATAGATAAAATTAAAACTGCAAATCCCTATTTTTATATCCTGTTTTTAAATATACTTC GAATTCCGGCATATCAGGGC
Product: sensory transduction protein kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MKKKLREPGAETTGNERVEDLLNQAEQYIRLENISSPSRKIKEKGLAEIIDVQAVQSLMEDFYKLARIPMCLEDLEGNIL VGVGWQDICIRYHRADPETCKRCIENSAKLAEGIAPGEFKLCRCRNSMWKMATPMIVSDQHVGNIFSGHFFFDDEPLDYE FFRARAGKYGFNEKEYIEALEKVPRLSREAVNTGMSFFMKFASMVLQVSYSNFRLYQALEERNVLMNSLRESEEKCRSFL EAANEGIWIINAEDKTIYVNKKMSGMLGYTQQEMIGRPGWDFIDEKDRCVSEKIREKKHQDIDESHEFKFICKDGSPLWA LVNTKSFFDRDGNFAGCIWMFTDITDRKQAEEALIRRENEFRTLAENSPDIIARYDRQKRYIYVNPAAAEPSGYSPEEIM GKNSIELGIDPETTKFWEESIENVFITGKPETIEFNYMSPEGKDYYFNTQLVPEFIDEKVNSVLAISRDITDKKIAEAKL KETLENLERLVRKRTAELEKAYYSLKESEKGLAEAQEMAHIGNWEWDIAANKTYWSEEMYHIFGRDTNRPAPVYTEHLNY IHPDDRDYFDSSTRKAGSEKTSIIEYRIVLDSGEERTVHMRAQAVFNEENIPIKVKGTVQDITERKKAEQTLVNLEIARK KEIHHRIKNNLQVISSLLDLQAENFSSKTCIKNSDVLNAFRESQDRIMSIALIHEELHEGGGNNALYFSPYLEKLVENLF QTYSLGNASISLYTDLEEDIFFDMDTAVPLGIIVNELVSNSLKHAFKGRSEGEIQIKLFKEGSGGEEKTESGMEKNKKRP AGKDTGTADTGYVLVVSDDGAGIPETINLENSDSLGLQLVNILVDQLEGEIELKRDNGTEFMIKINVRQGSLKSQAEEKN SQN
Sequences:
>Translated_883_residues MKKKLREPGAETTGNERVEDLLNQAEQYIRLENISSPSRKIKEKGLAEIIDVQAVQSLMEDFYKLARIPMCLEDLEGNIL VGVGWQDICIRYHRADPETCKRCIENSAKLAEGIAPGEFKLCRCRNSMWKMATPMIVSDQHVGNIFSGHFFFDDEPLDYE FFRARAGKYGFNEKEYIEALEKVPRLSREAVNTGMSFFMKFASMVLQVSYSNFRLYQALEERNVLMNSLRESEEKCRSFL EAANEGIWIINAEDKTIYVNKKMSGMLGYTQQEMIGRPGWDFIDEKDRCVSEKIREKKHQDIDESHEFKFICKDGSPLWA LVNTKSFFDRDGNFAGCIWMFTDITDRKQAEEALIRRENEFRTLAENSPDIIARYDRQKRYIYVNPAAAEPSGYSPEEIM GKNSIELGIDPETTKFWEESIENVFITGKPETIEFNYMSPEGKDYYFNTQLVPEFIDEKVNSVLAISRDITDKKIAEAKL KETLENLERLVRKRTAELEKAYYSLKESEKGLAEAQEMAHIGNWEWDIAANKTYWSEEMYHIFGRDTNRPAPVYTEHLNY IHPDDRDYFDSSTRKAGSEKTSIIEYRIVLDSGEERTVHMRAQAVFNEENIPIKVKGTVQDITERKKAEQTLVNLEIARK KEIHHRIKNNLQVISSLLDLQAENFSSKTCIKNSDVLNAFRESQDRIMSIALIHEELHEGGGNNALYFSPYLEKLVENLF QTYSLGNASISLYTDLEEDIFFDMDTAVPLGIIVNELVSNSLKHAFKGRSEGEIQIKLFKEGSGGEEKTESGMEKNKKRP AGKDTGTADTGYVLVVSDDGAGIPETINLENSDSLGLQLVNILVDQLEGEIELKRDNGTEFMIKINVRQGSLKSQAEEKN SQN >Mature_883_residues MKKKLREPGAETTGNERVEDLLNQAEQYIRLENISSPSRKIKEKGLAEIIDVQAVQSLMEDFYKLARIPMCLEDLEGNIL VGVGWQDICIRYHRADPETCKRCIENSAKLAEGIAPGEFKLCRCRNSMWKMATPMIVSDQHVGNIFSGHFFFDDEPLDYE FFRARAGKYGFNEKEYIEALEKVPRLSREAVNTGMSFFMKFASMVLQVSYSNFRLYQALEERNVLMNSLRESEEKCRSFL EAANEGIWIINAEDKTIYVNKKMSGMLGYTQQEMIGRPGWDFIDEKDRCVSEKIREKKHQDIDESHEFKFICKDGSPLWA LVNTKSFFDRDGNFAGCIWMFTDITDRKQAEEALIRRENEFRTLAENSPDIIARYDRQKRYIYVNPAAAEPSGYSPEEIM GKNSIELGIDPETTKFWEESIENVFITGKPETIEFNYMSPEGKDYYFNTQLVPEFIDEKVNSVLAISRDITDKKIAEAKL KETLENLERLVRKRTAELEKAYYSLKESEKGLAEAQEMAHIGNWEWDIAANKTYWSEEMYHIFGRDTNRPAPVYTEHLNY IHPDDRDYFDSSTRKAGSEKTSIIEYRIVLDSGEERTVHMRAQAVFNEENIPIKVKGTVQDITERKKAEQTLVNLEIARK KEIHHRIKNNLQVISSLLDLQAENFSSKTCIKNSDVLNAFRESQDRIMSIALIHEELHEGGGNNALYFSPYLEKLVENLF QTYSLGNASISLYTDLEEDIFFDMDTAVPLGIIVNELVSNSLKHAFKGRSEGEIQIKLFKEGSGGEEKTESGMEKNKKRP AGKDTGTADTGYVLVVSDDGAGIPETINLENSDSLGLQLVNILVDQLEGEIELKRDNGTEFMIKINVRQGSLKSQAEEKN SQN
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: COG2202
COG function: function code T; FOG: PAS/PAC domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 101276; Mature: 101276
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKLREPGAETTGNERVEDLLNQAEQYIRLENISSPSRKIKEKGLAEIIDVQAVQSLME CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH DFYKLARIPMCLEDLEGNILVGVGWQDICIRYHRADPETCKRCIENSAKLAEGIAPGEFK HHHHHHHCCHHHHHCCCCEEEEECHHHHHHEECCCCHHHHHHHHHCHHHHHHCCCCCCHH LCRCRNSMWKMATPMIVSDQHVGNIFSGHFFFDDEPLDYEFFRARAGKYGFNEKEYIEAL HHHHHHHHHHHCCCEEECCCCCCCEEECCEEECCCCCCHHHHHHHCCCCCCCHHHHHHHH EKVPRLSREAVNTGMSFFMKFASMVLQVSYSNFRLYQALEERNVLMNSLRESEEKCRSFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAANEGIWIINAEDKTIYVNKKMSGMLGYTQQEMIGRPGWDFIDEKDRCVSEKIREKKHQ HHCCCCEEEEECCCCEEEEECCCCCHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC DIDESHEFKFICKDGSPLWALVNTKSFFDRDGNFAGCIWMFTDITDRKQAEEALIRRENE CCCCCCCEEEEEECCCCEEEEEECHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHCCHH FRTLAENSPDIIARYDRQKRYIYVNPAAAEPSGYSPEEIMGKNSIELGIDPETTKFWEES HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHH IENVFITGKPETIEFNYMSPEGKDYYFNTQLVPEFIDEKVNSVLAISRDITDKKIAEAKL HCEEEEECCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH KETLENLERLVRKRTAELEKAYYSLKESEKGLAEAQEMAHIGNWEWDIAANKTYWSEEMY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH HIFGRDTNRPAPVYTEHLNYIHPDDRDYFDSSTRKAGSEKTSIIEYRIVLDSGEERTVHM HHCCCCCCCCCCCHHHHCCCCCCCCCCHHCCHHHHCCCCCCEEEEEEEEEECCCCCEEEE RAQAVFNEENIPIKVKGTVQDITERKKAEQTLVNLEIARKKEIHHRIKNNLQVISSLLDL EEHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAENFSSKTCIKNSDVLNAFRESQDRIMSIALIHEELHEGGGNNALYFSPYLEKLVENLF HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH QTYSLGNASISLYTDLEEDIFFDMDTAVPLGIIVNELVSNSLKHAFKGRSEGEIQIKLFK HHHCCCCCEEEEEECCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE EGSGGEEKTESGMEKNKKRPAGKDTGTADTGYVLVVSDDGAGIPETINLENSDSLGLQLV CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHH NILVDQLEGEIELKRDNGTEFMIKINVRQGSLKSQAEEKNSQN HHHHHHCCCCEEEEECCCCEEEEEEEECCCCHHHHHHHCCCCC >Mature Secondary Structure MKKKLREPGAETTGNERVEDLLNQAEQYIRLENISSPSRKIKEKGLAEIIDVQAVQSLME CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH DFYKLARIPMCLEDLEGNILVGVGWQDICIRYHRADPETCKRCIENSAKLAEGIAPGEFK HHHHHHHCCHHHHHCCCCEEEEECHHHHHHEECCCCHHHHHHHHHCHHHHHHCCCCCCHH LCRCRNSMWKMATPMIVSDQHVGNIFSGHFFFDDEPLDYEFFRARAGKYGFNEKEYIEAL HHHHHHHHHHHCCCEEECCCCCCCEEECCEEECCCCCCHHHHHHHCCCCCCCHHHHHHHH EKVPRLSREAVNTGMSFFMKFASMVLQVSYSNFRLYQALEERNVLMNSLRESEEKCRSFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAANEGIWIINAEDKTIYVNKKMSGMLGYTQQEMIGRPGWDFIDEKDRCVSEKIREKKHQ HHCCCCEEEEECCCCEEEEECCCCCHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC DIDESHEFKFICKDGSPLWALVNTKSFFDRDGNFAGCIWMFTDITDRKQAEEALIRRENE CCCCCCCEEEEEECCCCEEEEEECHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHCCHH FRTLAENSPDIIARYDRQKRYIYVNPAAAEPSGYSPEEIMGKNSIELGIDPETTKFWEES HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHH IENVFITGKPETIEFNYMSPEGKDYYFNTQLVPEFIDEKVNSVLAISRDITDKKIAEAKL HCEEEEECCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH KETLENLERLVRKRTAELEKAYYSLKESEKGLAEAQEMAHIGNWEWDIAANKTYWSEEMY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH HIFGRDTNRPAPVYTEHLNYIHPDDRDYFDSSTRKAGSEKTSIIEYRIVLDSGEERTVHM HHCCCCCCCCCCCHHHHCCCCCCCCCCHHCCHHHHCCCCCCEEEEEEEEEECCCCCEEEE RAQAVFNEENIPIKVKGTVQDITERKKAEQTLVNLEIARKKEIHHRIKNNLQVISSLLDL EEHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAENFSSKTCIKNSDVLNAFRESQDRIMSIALIHEELHEGGGNNALYFSPYLEKLVENLF HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH QTYSLGNASISLYTDLEEDIFFDMDTAVPLGIIVNELVSNSLKHAFKGRSEGEIQIKLFK HHHCCCCCEEEEEECCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE EGSGGEEKTESGMEKNKKRPAGKDTGTADTGYVLVVSDDGAGIPETINLENSDSLGLQLV CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHH NILVDQLEGEIELKRDNGTEFMIKINVRQGSLKSQAEEKNSQN HHHHHHCCCCEEEEECCCCEEEEEEEECCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]