| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228611
Identifier: 21228611
GI number: 21228611
Start: 2992348
End: 2993484
Strand: Reverse
Name: 21228611
Synonym: MM_2509
Alternate gene names: NA
Gene position: 2993484-2992348 (Counterclockwise)
Preceding gene: 21228619
Following gene: 21228610
Centisome position: 73.08
GC content: 31.75
Gene sequence:
>1137_bases TTGTCTTCTGAATTCTTTAGCATCGTTGATATAATAACTTTACCCGATGGAGCAAACTACAGCTATCAAGAGTTTCTTAA CGTTTTACTTCATGCGGCAACATCTTCTACTGATTCTCTTGAATCTGCAAGTAATGATCTCAAATCAAAAGTTCCAAACA CAAGAATACCTTCAGCTGATACTATTTTCAATTACATAAAATCCAATTCTATTGAATATATCCTCTCTTCTTTCCGAAAA ATAAATAATGAAATTTTTAGGATGATGAAGCTTAAAAACAATGTTCATGACATCGCTATTGACTTTCATGACGTTGAATA TTATGGATGCAGAGACACTCTCTGTATAAGGGGAATCAAACCAAAGAATGGAACTTCATGGGGATATTCTTTCTGCACCT TAGATGTAATTGGGAATTCTAAGCTAACACTTGATGTTATTGACATCAACGGATTAAGCAAAGATTATTCAATTCTTATG GAATCATTGTTTGAAAGGATTGAAAAAATGGGAGTAAAAGTGGGAACAGTATACATGGATAGAGAATTTTTTAACAGAAA AGTTATCTCAAAGATGGAGAAATACAAAGTCGATTTCGTAATTGCAGCTAAATCAAACAAAAGAATTAAGGAGATGCTTG AAAGGCATAGAAAAGAAAATGGAGATACTTCTACGGTTTTTGAATATAAGTTTCAAGGAGAAGAACAAACTTTTAACATT GTAGCAGTGTGGGATAAAGAAAAAGAATACAGTATATTTGCAACAAATAAAAAAGTGAGTTCAATAGACACATTTGTAAA GCAAATACCTGAAGAATACAGGAAGAGATGGAATATAGAAACAGGGTATAGAGTAAAAAAGGATTTTAAGATACGAACAT GTTCTAAATCACCTGTTGCAAGGACACTATTTTTTGTAGTTCAATGTATCATGTATAATATTTTGAATGTATTAAAGTCA GTTCTTGACATTACAGCATACCAAATGAAATCAGTAATAAATCAAGACATTATTAAGGCAGTAAAAGAAGGAGTTAATTC ATTATCCAATATTACAGTCAGGTCATTTCTTGAGTGCTTAACCAGATATAATAAAGAAAGAAGGCGAGCGCTTCGCGCTC GATTAAGAGATTTATAA
Upstream 100 bases:
>100_bases TGAAGGTATAATCAAAAAAGTATTGAAGACTATGAAGTCGTTTGCTATGACTCCAAAAAACGACTCCATGTCTGATGTAG ACACAGCCAGTTTACTGGCT
Downstream 100 bases:
>100_bases ATTTTTAAATATAACCAAAAAAAAATCATAAAATTAGTTAGTGGAAACTATGCACAAATTTTACTTCAGGACTTTAAAAT ACTGAAGTTTTTAGAACATT
Product: transposase
Products: NA
Alternate protein names: Transposase; Transposase ISC
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MSSEFFSIVDIITLPDGANYSYQEFLNVLLHAATSSTDSLESASNDLKSKVPNTRIPSADTIFNYIKSNSIEYILSSFRK INNEIFRMMKLKNNVHDIAIDFHDVEYYGCRDTLCIRGIKPKNGTSWGYSFCTLDVIGNSKLTLDVIDINGLSKDYSILM ESLFERIEKMGVKVGTVYMDREFFNRKVISKMEKYKVDFVIAAKSNKRIKEMLERHRKENGDTSTVFEYKFQGEEQTFNI VAVWDKEKEYSIFATNKKVSSIDTFVKQIPEEYRKRWNIETGYRVKKDFKIRTCSKSPVARTLFFVVQCIMYNILNVLKS VLDITAYQMKSVINQDIIKAVKEGVNSLSNITVRSFLECLTRYNKERRRALRARLRDL
Sequences:
>Translated_378_residues MSSEFFSIVDIITLPDGANYSYQEFLNVLLHAATSSTDSLESASNDLKSKVPNTRIPSADTIFNYIKSNSIEYILSSFRK INNEIFRMMKLKNNVHDIAIDFHDVEYYGCRDTLCIRGIKPKNGTSWGYSFCTLDVIGNSKLTLDVIDINGLSKDYSILM ESLFERIEKMGVKVGTVYMDREFFNRKVISKMEKYKVDFVIAAKSNKRIKEMLERHRKENGDTSTVFEYKFQGEEQTFNI VAVWDKEKEYSIFATNKKVSSIDTFVKQIPEEYRKRWNIETGYRVKKDFKIRTCSKSPVARTLFFVVQCIMYNILNVLKS VLDITAYQMKSVINQDIIKAVKEGVNSLSNITVRSFLECLTRYNKERRRALRARLRDL >Mature_377_residues SSEFFSIVDIITLPDGANYSYQEFLNVLLHAATSSTDSLESASNDLKSKVPNTRIPSADTIFNYIKSNSIEYILSSFRKI NNEIFRMMKLKNNVHDIAIDFHDVEYYGCRDTLCIRGIKPKNGTSWGYSFCTLDVIGNSKLTLDVIDINGLSKDYSILME SLFERIEKMGVKVGTVYMDREFFNRKVISKMEKYKVDFVIAAKSNKRIKEMLERHRKENGDTSTVFEYKFQGEEQTFNIV AVWDKEKEYSIFATNKKVSSIDTFVKQIPEEYRKRWNIETGYRVKKDFKIRTCSKSPVARTLFFVVQCIMYNILNVLKSV LDITAYQMKSVINQDIIKAVKEGVNSLSNITVRSFLECLTRYNKERRRALRARLRDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43946; Mature: 43815
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEFFSIVDIITLPDGANYSYQEFLNVLLHAATSSTDSLESASNDLKSKVPNTRIPSAD CCCHHEEHEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH TIFNYIKSNSIEYILSSFRKINNEIFRMMKLKNNVHDIAIDFHDVEYYGCRDTLCIRGIK HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCEEECCC PKNGTSWGYSFCTLDVIGNSKLTLDVIDINGLSKDYSILMESLFERIEKMGVKVGTVYMD CCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC REFFNRKVISKMEKYKVDFVIAAKSNKRIKEMLERHRKENGDTSTVFEYKFQGEEQTFNI HHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEE VAVWDKEKEYSIFATNKKVSSIDTFVKQIPEEYRKRWNIETGYRVKKDFKIRTCSKSPVA EEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCHHH RTLFFVVQCIMYNILNVLKSVLDITAYQMKSVINQDIIKAVKEGVNSLSNITVRSFLECL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRYNKERRRALRARLRDL HHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSEFFSIVDIITLPDGANYSYQEFLNVLLHAATSSTDSLESASNDLKSKVPNTRIPSAD CCHHEEHEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH TIFNYIKSNSIEYILSSFRKINNEIFRMMKLKNNVHDIAIDFHDVEYYGCRDTLCIRGIK HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCEEECCC PKNGTSWGYSFCTLDVIGNSKLTLDVIDINGLSKDYSILMESLFERIEKMGVKVGTVYMD CCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC REFFNRKVISKMEKYKVDFVIAAKSNKRIKEMLERHRKENGDTSTVFEYKFQGEEQTFNI HHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEE VAVWDKEKEYSIFATNKKVSSIDTFVKQIPEEYRKRWNIETGYRVKKDFKIRTCSKSPVA EEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCHHH RTLFFVVQCIMYNILNVLKSVLDITAYQMKSVINQDIIKAVKEGVNSLSNITVRSFLECL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRYNKERRRALRARLRDL HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA